1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
TTGAACTAAAGAAGCTGATTGAAGCTAATCCCTTGTTCCGTGACAAGCTTCAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAGgtagcacatgatggagaaacacggcttccccttacattcaatcatctggaattttgtttcttgcaatacagctggttacataagtacatctcatgagagg...
species | Oryza sativa |
transcript | LOC_Os03g14980.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAG CTTAAACTGGCAGCACCAGCTTTGCAAAAATCCTAGACCTAACCCTGATATEST: gi|29656775|gb|CB653050.1|CB653050
genomic: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAGgtagcacatg ... tatgttgcagCTTAAACTGGCAGCACCAGCTTTGCAAAAATCCTAGACCTAACCCTGATAT
EST: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAG CTTAAACTGGCAGCACCAGCTTTGCAAAAATCCTAGACCTAACCCTGATATEST: gi|29629469|gb|CB634478.1|CB634478
genomic: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAGgtagcacatg ... tatgttgcagCTTAAACTGGCAGCACCAGCTTTGCAAAAATCCTAGACCTAACCCTGATAT
EST: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAG CTTAAACTGGCAGCACCAGCTTTGCAAAAATCCTAGACCTAACCCTGATATEST: gi|27334445|gb|CA882896.1|CA882896
genomic: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAGgtagcacatg ... tatgttgcagCTTAAACTGGCAGCACCAGCTTTGCAAAAATCCTAGACCTAACCCTGATAT
EST: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAG CTTAAACTGGCAGCACCAGCTTTGCAAAAATCCTAGACCCAACCCTGATATEST: gi|163918634|gb|EG710316.1|EG710316
genomic: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAGgtagcacatg ... tatgttgcagCTTAAACTGGCAGCACCAGCTTTGCAAAAATCCTAGACCTAACCCTGATAT
EST: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAG CTTAAACTGGCAGCACCAGCTTTGCAAAAATCCTAGACCTAACCCTGATATEST: gi|88426720|gb|CI584083.1|CI584083
genomic: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAGgtagcacatg ... tatgttgcagCTTAAACTGGCAGCACCAGCTTTGCAAAAATCCTAGACCTAACCCTGATAT
EST: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAG CTTAAACTGGCAGCACCAGEST: gi|29656774|gb|CB653049.1|CB653049
genomic: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAGgtagcacatg ... tatgttgcagCTTAAACTGGCAGCACCAG
EST: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAG CTTAAACTGGCAGCACCAGCTTTGCAAAAATCCTAGACCTAACCCTGATATEST: gi|88717854|gb|CI739366.1|CI739366
genomic: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAGgtagcacatg ... tatgttgcagCTTAAACTGGCAGCACCAGCTTTGCAAAAATCCTAGACCTAACCCTGATAT
EST: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAG CTTAAACTGGCAGCACCAG
genomic: CAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAGgtagcacatg ... tatgttgcagCTTAAACTGGCAGCACCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAACTAAAGAAGCTGATTGAAGCTAATCCCTTGTTCCGTGACAAGCTTCAGTTTCCAAATCTGAAGAGCTCCAGATTGCGGACACTTATAAACCAGAGgtagcacatgatggagaaacacggcttccccttacattcaatcatctggaattttgtttcttgcaatacagctggttacataagtacatctcatgagagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT