Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAACTGGAAGCGCTAATCTCTGCTGTGAACAGTAGTGATAGCAGCCACATCGTTCATGTCCCTCCCGGTGAAAATGCCCTTTCCGATGTGCTTATAAGgtaataatgtatcaatttgttcgggctctaggttgttgttttaatgtatttctgctgacaaattaatatccctcttttcacag

Basic information

species Oryza sativa
transcript LOC_Os03g13970.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G147671_T02 (Zea mays), 5'ss of exon 5
AGAAACTGGAAGCGCTAATCTCTGCTGTGAACAGTAGTGATAGCAGCCACATCGTTCATGTCCCTCCCGGTGAAAATGCCCTTTCCGATGTGCTTATAAGgtaataatgtatcaatttgttcgggctctaggttgttgttttaatgtatttctgctgacaaattaatatccctcttttcacag
|||||||||||||  | ||| ||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| ||  |||||||||   ||  || | |    | | |||| ||| || || |  || || | || | ||    |  | ||  |||||   |||
AGAAACTGGAAGCATTGATCGCTGCTGTTAACAGCAGTGATAGCAGTCACATTGTTCATGTCCCTCCTGGTGAAAATGCTCTCTCTGATGTCCTCCTAAGgtaattgggtgcca-tgttcctgcgttctaagtt-ttcttatgctgcatatatgttaaccttatt-tttctttctttatccag

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G165926_T02 (Zea mays), 5'ss of exon 5
AGAAACTGGAAGCGCTAATCTCTGCTGTGAACAGTAGTGATAGCAGCCACATCGTTCATGTCCCTCCCGGTGAAAATGCCCTTTCCGATGTGCTTATAAGgtaataatgtatcaatttgttcgggctctaggttgttgttttaatgtatttctgctgacaaattaatatccctcttttcacag
|||||||||||||  | ||  ||||||| ||||| ||||||||||| ||||| |||||| ||||||| |||||||||||||| || ||||| ||  |||||||||  |||  ||  ||   |||| |||| ||| || || |  || || | || | ||    |  | ||  ||||| | |||
AGAAACTGGAAGCATTGATTGCTGCTGTTAACAGCAGTGATAGCAGTCACATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgtgccacgttac-cgggttctaagtt-ttcttatgctgcatatatgttaaccttgtt-tttctatctttacccag

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv04s0023g03620.t01 (Vitis vinifera), 5'ss of exon 5
AGAAACTGGAAGCGCTAATCTCTGCTGTGAACAGTAGTGATAGCAGCCACATCGTTCATGTCCCTCCCGGTGAAAATGCCCTTTCCGATGTGCTTATAAGgtaa----taatgtatcaatttgttcgggctctaggttgttgttttaatgtatttc-tgctgacaaattaatatccctcttttcacag------------------------
||||||| || || ||  |   | |||| ||||  | |||||| |||||||| |||||||| ||| | |||  |||||| ||||| || |||||||||||||||    | |  | ||| ||| ||     |  |   |    |   | ||||     |  |||||   |||| ||    | |  |                           
AGAAACTTGAGGCCCTTCTTGGTTCTGTAAACAACAATGATAGTAGCCACATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtcaactttcattttttttttttttcattctcgcatgacattgtagaaaattatgacagtgtaatttcatcttatatattcttttgttttgtttcctcatggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33657883|gb|CF280497.1|CF280497
EST:     ATCGTTCATGTCCCTCCCGGTGAAAATGCCCTTTCCGATGTGCTTATAAG                         TACTCCTATCTTCACTG
genomic: ATCGTTCATGTCCCTCCCGGTGAAAATGCCCTTTCCGATGTGCTTATAAGgtaataatgt ... cttttcacagTACTCCTATCTTCACTG
EST: gi|58663975|gb|CK052661.1|CK052661
EST:     ATCGTTCATGTCCCTCCCGGTGAACATGCCCTTTCCGATGTGCTTATAAG                         TACTCCTATCTTCACTGGTGAAG
genomic: ATCGTTCATGTCCCTCCCGGTGAAAATGCCCTTTCCGATGTGCTTATAAGgtaataatgt ... cttttcacagTACTCCTATCTTCACTGGTGAAG
EST: gi|88358175|gb|CI605100.1|CI605100
EST:     TCGTTCATGTCCCTCCCGGGGAAAATGCCCTTTTCCGATGTGCTTATAAG                         TACTCCTATCTTTCACTGGTG
genomic: TCGTTCATGTCCCTCCCGGTGAAAATGCCCTTT-CCGATGTGCTTATAAGgtaataatgt ... cttttcacagTACTCCTATCTT-CACTGGTG