1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGAGAGGGATTTTCAAAATTTTAGTGATGATGAGGTTATGGATACAATGAAGCATGTCATCAATCTTTCCAATGTGGTTGATAGACTCTGCAAGCAAATgtaagagctcaacaaaagtttggtagtgtctgtaaattactgttctaactatattaccttgcag
species | Oryza sativa |
transcript | LOC_Os03g13100.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGCATGTCATCAATCTTTCCAATGTGGTTGATAGACTCTGCAAGCAAAT GTATCAGTGCATTGAGAATGATTTGTTGTATCCACTGCGTACGCCTCATAAEST: gi|87034810|gb|CI189434.1|CI189434
genomic: AAGCATGTCATCAATCTTTCCAATGTGGTTGATAGACTCTGCAAGCAAATgtaagagctc ... taccttgcagGTATCAGTGCATTGAGAATGATTTGTTGTATCCACTGCGTACGCCTCATAA
EST: GTCATCAATCTTTCCAATGTGGTTGATAGACTCTGCAAGCAAAT GTATCAGTGCATTGAGAATGATTTGTTGTATCCACTGCGTACGCCTCATAAEST: gi|89161846|gb|CI102194.1|CI102194
genomic: GTCATCAATCTTTCCAATGTGGTTGATAGACTCTGCAAGCAAATgtaagagctc ... taccttgcagGTATCAGTGCATTGAGAATGATTTGTTGTATCCACTGCGTACGCCTCATAA
EST: AAGCATGTCATCAATCTTTCCAATGTGGTTGATAGACTCTGCAAGCAAAT GTATCAGTGCATTGAGAATGATTTGTTGTATCCACTGCGTACGCCTCATAAEST: gi|29622042|gb|CB627053.1|CB627053
genomic: AAGCATGTCATCAATCTTTCCAATGTGGTTGATAGACTCTGCAAGCAAATgtaagagctc ... taccttgcagGTATCAGTGCATTGAGAATGATTTGTTGTATCCACTGCGTACGCCTCATAA
EST: AAGCATGTCATCAATCTTTCCAATGTGGTTGATAGACTCTGCAAGCAAAT GTATCAGTGCATTGAGAATGATTTGTTGTATCCACTGCGTACGCCTCATAAEST: gi|88228695|gb|CI228175.1|CI228175
genomic: AAGCATGTCATCAATCTTTCCAATGTGGTTGATAGACTCTGCAAGCAAATgtaagagctc ... taccttgcagGTATCAGTGCATTGAGAATGATTTGTTGTATCCACTGCGTACGCCTCATAA
EST: CCAATGTGGTTGATAGACTCTGCAAGCAAAT GTATCAGTGCATTGAGAATGATTTGTTGTATCCACTGCGTACGCCTCATAA
genomic: CCAATGTGGTTGATAGACTCTGCAAGCAAATgtaagagctc ... taccttgcagGTATCAGTGCATTGAGAATGATTTGTTGTATCCACTGCGTACGCCTCATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAGAGGGATTTTCAAAATTTTAGTGATGATGAGGTTATGGATACAATGAAGCATGTCATCAATCTTTCCAATGTGGTTGATAGACTCTGCAAGCAAATgtaagagctcaacaaaagtttggtagtgtctgtaaattactgttctaactatattaccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA