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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGGGACTTCTCTATTTCCCGTGCATCTGTAGAGTGGGGTATTCCGGTGCCAAATGACACCAAACAGACAATATACGTGTGGTTTGATGCATTATTAGGgtatgtttctctgcttctttacatgatattcattaatgtgtgctcctgtttactagtcttgctgggaatttattatactagtcgtgcttttatttcttcg...

Basic information

species Oryza sativa
transcript LOC_Os03g11120.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g11120.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G029055_T02 (Zea mays), 5'ss of exon 5
TAAGGGACTTCTCTATTTCCCGTGCATCTGTAGAGTGGGGTATTCCGGTGCCAAATGACACCAAACAGACAATATACGTGTGGTTTGATGCATTATTAGGgtatgtttctctgcttctttacatgat-attcattaatgtgtgctcctgtttactagtcttgctgggaatttattatac---tagtcgtgcttttatttcttcg
|||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| || ||||| ||||||||||| ||||||||||||||  |||||||||||||||||||  ||||  || || | |||     |||  |  |  ||   ||| |   |  |  |  ||||| |  |     || ||   | ||||| |   
TAAGGGACTTTTCTATTTCTCGTGCATCTGTAGAATGGGGCATTCCGGTGCCAAACGATACCAAGCAGACAATATATGTGTGGTTTGATGCTCTATTAGGgtatgtttctct-tttctgcacctgctcatttgcatatggttaataatggagacttgctattttatgtttttataactcattctgttgtatatgtattttt---

upper sequence: LOC_Os03g11120.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 5
TAAGGGACTTCTCTATTTCCCGTGCATCTGTAGAGTGGGGTATTCCGGTGCCAAATGACACCAAACAGACAATATACGTGTGGTTTGATGCATTATTAGGgtatgtttctctgcttc----tttacatgatattcattaatgtg---tgctcctgtttactagtcttgctggga--atttattatactagtcgtgcttttatttcttcg
| |||||||| || |||||||| ||||| || |||||||| ||||| || ||  ||||||  |  ||||| ||||| || ||||||||||| ||| ||||||| |  | | |  ||      ||    |   |||  || | |    ||   || ||   || ||||   |      | ||| ||| |    |  || | |        
TGAGGGACTTTTCCATTTCCCGAGCATCAGTTGAGTGGGGCATTCCTGTTCCTGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGGgtaaggatatgtattttatagcttgtgcgtgcttctctagtttcccttgactctattctataatcttatagttcctgtctatcataatcaatg-actatca--------

upper sequence: LOC_Os03g11120.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 5
TAAGGGACTTCTCTATTTCCCGTGCATCTGTAGAGTGGGGTATTCCGGTGCCAAATGACACCAAACAGACAATATACGTGTGGTTTGATGCATTATTAGGgtatgtttctctgcttctttacatgatattcattaatgtgtgctcctgtttactagtc-ttgctgggaatttattatactagt--cgtgcttttatttcttcg
| ||||| || ||||||||||| |||||||| || ||||| ||||| || || ||||||| ||| ||||| |||||||| ||||||||||| ||| | |||||   || |    ||  ||      ||||   |  ||   | |  ||   | ||    ||      || ||  |     | |  | ||||||  || ||   
TGAGGGATTTTTCTATTTCCCGAGCATCTGTGGATTGGGGCATTCCTGTTCCTAATGACAACAAGCAGACCATATACGTCTGGTTTGATGCTTTACTGGGgtaaagtttttcctttagttcggaattattttatgttgcaagtttgtgagcattatcaattaacataaacttggtgcttcatttccttgctttccttgct---