1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AACCTTGGACTAGAGGAGGTTGGGGTGAAATTGGACAAGAACGGAGCAATAATGgtaggttaagcaatcaatcaagtgatacttgacttcgagtttctcagctttgcgactctttaacatgttgagcttctgcactgtatttatgtttgctag
species | Oryza sativa |
transcript | LOC_Os03g06740.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGGACTAGAGGAGGTTGGGGTGAAATTGGACAAGAACGGAGCAATAATG GTTGATGAGTATTCTCGAACCTCAGTTGATTCAATTTGGGCAGTGGGAGATEST: gi|218480270|gb|FG970031.1|FG970031
genomic: TTGGACTAGAGGAGGTTGGGGTGAAATTGGACAAGAACGGAGCAATAATGgtaggttaag ... tgtttgctagGTTGATGAGTATTCTCGAACCTCAGTTGATTCAATTTGGGCAGTGGGAGAT
EST: TTGGACTAGAGGAGTTTGGGGTGAAATTGGACAAGAACGGAGCAATAATG GTTGATGAGTATTCTCGAACCTCAGTTGATTCAATTTGGGCAGTGGGAGATEST: gi|33680417|gb|CF308656.1|CF308656
genomic: TTGGACTAGAGGAGGTTGGGGTGAAATTGGACAAGAACGGAGCAATAATGgtaggttaag ... tgtttgctagGTTGATGAGTATTCTCGAACCTCAGTTGATTCAATTTGGGCAGTGGGAGAT
EST: TTGGACTAGAGGAGGTTGGGGTGAAATTGGACAAGAACGGAGCAATAATG GTTGATGAGTATTCTCGAACCTCAGTTGATTCAATTTGGGCAGTGGGAGATEST: gi|33680113|gb|CF308352.1|CF308352
genomic: TTGGACTAGAGGAGGTTGGGGTGAAATTGGACAAGAACGGAGCAATAATGgtaggttaag ... tgtttgctagGTTGATGAGTATTCTCGAACCTCAGTTGATTCAATTTGGGCAGTGGGAGAT
EST: TTGGACTAGAGGAGGTTGGGGTGAAATTGGACAAGAACGGAGCAATAATG GTTGATGAGTATTCTCGAACCTCAGTTGATTCAATTTGGGCAGTGGGAGAT
genomic: TTGGACTAGAGGAGGTTGGGGTGAAATTGGACAAGAACGGAGCAATAATGgtaggttaag ... tgtttgctagGTTGATGAGTATTCTCGAACCTCAGTTGATTCAATTTGGGCAGTGGGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCTTGGACTAGAGGAGGTTGGGGTGAAATTGGACAAGAACGGAGCAATAATGgtaggttaagcaatcaatcaagtgatacttgacttcgagtttctcagctttgcgactctttaacatgttgagcttctgcactgtatttatgtttgctag
- - - - - AGAGGA
- - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - GGAGCA