1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGTCTTGCCTTTGCCCAGGAATCTGGATGTCTTTTTCTTGAGAGCAGTGCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtatacttgcagaaataatatactaagagcaagtttaatagtatagcccactattagctccaattcatctatagtcaatctaatagccaattcatacaat...
species | Oryza sativa |
transcript | LOC_Os03g05280.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAG ATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGEST: gi|86592468|gb|CI253149.1|CI253149
genomic: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtatacttgc ... cctatttcagATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGG
EST: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAG ATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGEST: gi|33691502|gb|CF319741.1|CF319741
genomic: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtatacttgc ... cctatttcagATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGG
EST: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAG ATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGEST: gi|89178530|gb|CI015235.1|CI015235
genomic: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtatacttgc ... cctatttcagATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGG
EST: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAG ATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGEST: gi|33688585|gb|CF316824.1|CF316824
genomic: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtatacttgc ... cctatttcagATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGG
EST: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAG ATTCTTGAGGTACCAAGTCTCCTGGAGGAAGGTTCTTCAGTTGTCAAGAGGEST: gi|33654292|gb|CF276906.1|CF276906
genomic: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtatacttgc ... cctatttcagATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGG
EST: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAG ATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGEST: gi|125863360|gb|EL586679.1|EL586679
genomic: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtatacttgc ... cctatttcagATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGG
EST: CAAAACAAGAGAAAATGTGGAGAAATGC-TTGNAAGAGCTTGCGTTAAAG ATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGEST: gi|88201501|gb|CI201856.1|CI201856
genomic: CAAAACAAGAGAAAATGTGGAGAAATGCTTTG-AAGAGCTTGCGTTAAAGgtatacttgc ... cctatttcagATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGG
EST: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAG ATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGEST: gi|88844832|gb|CI022186.1|CI022186
genomic: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtatacttgc ... cctatttcagATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGG
EST: TGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAG ATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTNCAGTTGTCAAGAGEST: gi|89190985|gb|CI392838.1|CI392838
genomic: TGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtatacttgc ... cctatttcagATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTT-CAGTTGTCAAGAG
EST: GAGCTTGCGTTAAAG ATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGA-GEST: gi|33693315|gb|CF321554.1|CF321554
genomic: GAGCTTGCGTTAAAGgtatacttgc ... cctatttcagATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGG
EST: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAG ATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGEST: gi|86845584|gb|CI346928.1|CI346928
genomic: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtatacttgc ... cctatttcagATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGG
EST: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAG ATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGG
genomic: CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtatacttgc ... cctatttcagATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTCTTGCCTTTGCCCAGGAATCTGGATGTCTTTTTCTTGAGAGCAGTGCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtatacttgcagaaataatatactaagagcaagtttaatagtatagcccactattagctccaattcatctatagtcaatctaatagccaattcatacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaataa