1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTTTTGCAGTGGATATACACCCAGgtatatgattgttctgtaatgatgtatatttgcattttcctggtctgctagtgtgtttaacattcaagtgttgtatggtgatatgcgatatttagcctgt...
species | Oryza sativa |
transcript | LOC_Os03g04140.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTTTTGCAGTGGATATACACCCAG CGGCCAGAATTGGAGAGGGAATATTGTTGGATCATGGAACGGGTCTAGTTAEST: gi|84117447|gb|CD151214.1|CD151214
genomic: GTTTTTGCAGTGGATATACACCCAGgtatatgatt ... aaatctgcagCGGCCAGAATTGGAGAGGGAATATTGTTGGATCATGGAACGGGTCTAGTTA
EST: GTTTTTGCAGTGGATATACACCCAG CGGCCAGAATTGGAGAGGGAATATTGTTGGATCATGGAACGGGTCTAGTTAEST: gi|58693702|gb|CK082389.1|CK082389
genomic: GTTTTTGCAGTGGATATACACCCAGgtatatgatt ... aaatctgcagCGGCCAGAATTGGAGAGGGAATATTGTTGGATCATGGAACGGGTCTAGTTA
EST: GTTTTTGCAGTGGATATACACCCAG CGGCCAGAATTGGAGAGGGAATATTGTTGGATCATGGAACGGGTCTAGTTAEST: gi|29681231|gb|CB677506.1|CB677506
genomic: GTTTTTGCAGTGGATATACACCCAGgtatatgatt ... aaatctgcagCGGCCAGAATTGGAGAGGGAATATTGTTGGATCATGGAACGGGTCTAGTTA
EST: GTTTTTGCAGTGGATATACACCCAG CGGCCAGAATTGGAGAGGGAATATTGTTGGATCATGGAACGGGTCTAGTTAEST: gi|38480201|gb|CF964290.1|CF964290
genomic: GTTTTTGCAGTGGATATACACCCAGgtatatgatt ... aaatctgcagCGGCCAGAATTGGAGAGGGAATATTGTTGGATCATGGAACGGGTCTAGTTA
EST: G-TTTTGCAGTGGATATACACCCAG CGGCCAGAATTGGAGAGGGAATATTGTTGGATCATGGAACGGGTCTAGTTA
genomic: GTTTTTGCAGTGGATATACACCCAGgtatatgatt ... aaatctgcagCGGCCAGAATTGGAGAGGGAATATTGTTGGATCATGGAACGGGTCTAGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTTGCAGTGGATATACACCCAGgtatatgattgttctgtaatgatgtatatttgcattttcctggtctgctagtgtgtttaacattcaagtgttgtatggtgatatgcgatatttagcctgt
- - - - AGTGGA