1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGTTTCTGTGCTTTGGTAATTCAGTTGCTTCAACCCGCTTCTTGCTCCAAGATGAATTCAACATACAGACAACTAAATGCGATAACTGCATCATTgtactgtcactgtcctcttgttgtttgttttactaacttttaggtataattcctatgttccctttctatgagactataacactgcagaagatcactcttttcctgtag
species | Oryza sativa |
transcript | LOC_Os03g03180.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCAAGATGAATTCACCATACAGACAACTAAATGCGATAACTGCATCA-T GGCTTTCATGTTCTGCCTCCAACAAATTGCTTGTATCTTCTCTATAGTTGCEST: gi|25797080|gb|CA753041.1|CA753041
genomic: TCCAAGATGAATTCAACATACAGACAACTAAATGCGATAACTGCATCATTgtactgtcac ... tttcctgtagGGC-TTCATGTTCTGCCTCCAACAAATTGCTTGTATCTTCTCTATAGTTGC
EST: TCCAAGATGAATTCAACATACAGACAACTAAATGCGATAACTGCATCATT GGCTTCATGTTCTGCCTCCAACAAATTGCTTGTATCTTCTCTATAGTTGCCEST: gi|58592334|gb|CF990642.1|CF990642
genomic: TCCAAGATGAATTCAACATACAGACAACTAAATGCGATAACTGCATCATTgtactgtcac ... tttcctgtagGGCTTCATGTTCTGCCTCCAACAAATTGCTTGTATCTTCTCTATAGTTGCC
EST: TCCAAGATGAATTCAACATACAGACAACTAAATGCGATAACTGCATCATT GGCTTCATGTTCTGCCTCCAACAAATTGCTTGTATCTTCTCTATAGTTGCCEST: gi|29623019|gb|CB628030.1|CB628030
genomic: TCCAAGATGAATTCAACATACAGACAACTAAATGCGATAACTGCATCATTgtactgtcac ... tttcctgtagGGCTTCATGTTCTGCCTCCAACAAATTGCTTGTATCTTCTCTATAGTTGCC
EST: TCCAAGATGAATTCAACATACAGACAACTAAATGCGATAACTGCATCATT GGCTTCATGTTCTGCCTCCAACAAATTGCTTGTATCTTCTCTATAGTTGCCEST: gi|325493801|gb|JG458325.1|JG458325
genomic: TCCAAGATGAATTCAACATACAGACAACTAAATGCGATAACTGCATCATTgtactgtcac ... tttcctgtagGGCTTCATGTTCTGCCTCCAACAAATTGCTTGTATCTTCTCTATAGTTGCC
EST: CCAAGATGAATTCAACATACAAGACAACTAAATGCGATAACTGCATCATT GGCTTCATGTTCTGCCTCCAACAAATTGCTTGTATCTTCTCTATAGTTGCCEST: gi|2310999|gb|C27154.1|C27154
genomic: CCAAGATGAATTCAACATAC-AGACAACTAAATGCGATAACTGCATCATTgtactgtcac ... tttcctgtagGGCTTCATGTTCTGCCTCCAACAAATTGCTTGTATCTTCTCTATAGTTGCC
EST: TCCAAGATGAATTCAACATACAGACAACTAAATGCGATAACTGCATCATT GGCTTCATGTTCTGCCTCCAACAAATTGCTTGTATCTTCTCTATAGTTGCC
genomic: TCCAAGATGAATTCAACATACAGACAACTAAATGCGATAACTGCATCATTgtactgtcac ... tttcctgtagGGCTTCATGTTCTGCCTCCAACAAATTGCTTGTATCTTCTCTATAGTTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTTCTGTGCTTTGGTAATTCAGTTGCTTCAACCCGCTTCTTGCTCCAAGATGAATTCAACATACAGACAACTAAATGCGATAACTGCATCATTgtactgtcactgtcctcttgttgtttgttttactaacttttaggtataattcctatgttccctttctatgagactataacactgcagaagatcactcttttcctgtag
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