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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGGGCAATGTCTACTGATGGGCTCAGACCAGCTTTTTATACAATCAATGGAGTGGTCTATGCAATCCAGgtgactttgccatccacatttcttactgttgatataattgcttctctctacaaactcatacatgaaactcattatcatgacaattggaaaacttgttact...

Basic information

species Oryza sativa
transcript LOC_Os03g02850.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G171469_T02 (Zea mays), 5'ss of exon 5
GCACGGGCAATGTCTACTGATGGGCTCAGACCAGCTTTTTATACAATCAATGGAGTGGTCTATGCAATCCAGgtgactttgccatccacatttcttactgttga---tataattgcttctctctacaaactcatacatgaaactcattatcatgacaattggaa--aacttgttact
||||| ||| |||| |||||||||||| | |||||||| || |||||||||||| || | ||||  || ||||| | ||    ||    |||||| |||| |||   |||||  || | |     | ||     ||| |    |  | | |||| |||| |     ||   |||   
GCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAATGGAATGATATATGTCATTCAGgtaatttacgtatttggatttctcactgatgagcttataagagcatgtactagccaaa--gaacaggccttttttcaccatgtcaatggttcttaaaaggtt---

upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 6
GCACGGGCAATGTCTACTGATGGGCTCAGACCAGCTTTTTATACAATCAATGGAGTGGTCTATGCAATCCAGgtgac---tttgccatccacatttcttactgttgatataattgcttctctctacaaactcatac-atgaa-actcattat-catgacaattggaaaacttgttact
||||| || ||||| ||||||||||| |||||| |||| |||   ||||| || |||||||||||||| |||||||      ||   |    ||||  | ||    ||   | |       | || |      | |  || | | | || |   || |   ||  | |   |      
GCACGTGCCATGTCGACTGATGGGCTTAGACCAACTTTCTATTGGATCAACGGTGTGGTCTATGCAATTCAGgtgataaacgtgttgtggtaatttaatgctacatatgccaatatgctcttttatagcgctgtgctgtggatattgatcacatataaagttttaatagtct------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29659764|gb|CB656039.1|CB656039
EST:     ATGCAATCCAG                         ATAATACTTTGGATGGCGTTGTGGTGGAAACCAGTTCGAGCAATGGTCATC
genomic: ATGCAATCCAGgtgactttgc ... tgattttcagATAATACTTTGGATGGCGTTGTGGTGGAAACCAGTTCGAGCAATGGTCATC
EST: gi|29664030|gb|CB660305.1|CB660305
EST:     CAGACCAGCTTTTTATACAATCAATGGAGTGGTCTATGCAATCCAG                         ATAATACTTTGGATGGCGTTGTGGTGGAAACCAGTTCTAGCAATGGTCATC
genomic: CAGACCAGCTTTTTATACAATCAATGGAGTGGTCTATGCAATCCAGgtgactttgc ... tgattttcagATAATACTTTGGATGGCGTTGTGGTGGAAACCAGTTCGAGCAATGGTCATC