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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAAAATTGAGTTAGATACAGTAACTGAGCTGTCAGCATTCTGCGAGAAGGCAAGCATGgtaacactacatatcattattgcatttatcatatatgtaccgctttaacaacattggttattatcagggttgcatttatcatatatcttgtgctgatttcattatcag

Basic information

species Oryza sativa
transcript LOC_Os03g02690.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02690.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G044247_T01 (Zea mays), 5'ss of exon 5
GCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAAAATTGAGTTAGATACAGTAACTGAGCTGTCAGCATTCTGCGAGAAGGCAAGCATGgtaaca--------ctacatatcattattgcattta--tcatatatgtaccgctttaacaacattggttattatcagg--gttgcatttatcata-tat---cttgtgctg--atttcattatcag-------
|||||||| |||||| | | ||| || || |||||||| ||||| ||| |||| ||||| ||||| |||||||| |||||||||||||||||| |||||| |        || |  | | |  ||     |   ||  | |  |||| |     || ||    ||       ||  |    | | || ||| |||   |||| ||||   |||| |  |||        
GCAGCGGCGTTTGGTCTGAGCAGCGTCGTCTACGTTCCGAAAATCGAGCTAGAGACAGTGACTGAACTGTCAGCGTTCTGCGAGAAGGCAAGCGTGgtaataagctgcaactgctcaccgtcgttagggctgcttctgaaacttaccacaccgccatcaccattttgagcttggcagccagactaataataatatgaacttgcgctgtggtttcctggtcattaattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27546884|gb|CA764989.2|CA764989
EST:     AGTTAGATACAGTAACTGAGCTGTCAGCATTCTGCGAGAAGGCAAGCATG                         GGTTGCTTGGTCGCACCAACATTATCAATTGGCTCAGTGCTCCTACAGCAA
genomic: AGTTAGATACAGTAACTGAGCTGTCAGCATTCTGCGAGAAGGCAAGCATGgtaacactac ... tcattatcagGGTTGCTTGGTCACACCAACATTATCAATTGGCTCAGTGCTCCTACAGCAA
EST: gi|29684781|gb|CB681056.1|CB681056
EST:     AGTTAGATACAGTAACTGAGCTGTCAGCATTCTGCGAGAAGGCAAGCATG                         GGTTGCTTGGTCACACCAACATTATCAATTGGCTCAGTGCTCCTACAGCAA
genomic: AGTTAGATACAGTAACTGAGCTGTCAGCATTCTGCGAGAAGGCAAGCATGgtaacactac ... tcattatcagGGTTGCTTGGTCACACCAACATTATCAATTGGCTCAGTGCTCCTACAGCAA