Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTACTAGGAACTCCAAATGAACAAAGTTGGCCAGGAGTTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaaacagcataaagattttattaggcgggtgaactgcatccatatactgtgccactaatattccttgactgaaatcttcatcccag

Basic information

species Oryza sativa
transcript LOC_Os03g02680.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02680.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G143213_T02 (Zea mays), 5'ss of exon 7
GGTACTAGGAACTCCAAATGAACAAAGTTGGCCAGGAGTTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaaacagcataaagattttattaggcgggtg--------aactgcatc-catatactgtgcca---ctaatattccttgactgaaatcttcatcccag-------------
||| ||||| || || ||||||||| ||||||| ||||| || |  || ||||||| |||| |||||||||||| ||||||||| |||||| ||||  |||||||||  ||||   |    |||          || |||||    ||| ||   |||   || | | |   ||  ||  || |  ||||||              
GGTGCTAGGTACACCGAATGAACAAGGTTGGCCTGGAGTCAGTTGTTTGCCTGACTTCAAGACTGCTTTCCCCAGGTGGCAAGCTCAGgtaagaca--acagcataagcatttcgctgcctgggcacctgtggcaagtgcattgtgtatcctcatccatagcttacaatttgtgtttgtcatatgtatcccatgccttcactccag

upper sequence: LOC_Os03g02680.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G008327_T01 (Zea mays), 5'ss of exon 6
GGTACTAGGAACTCCAAATGAACAAAGTTGGCCAGGAGTTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaaacagcataaagattttattaggcgggtg----aactgcatc-catatactgtgcca---ctaatattccttgactgaaatcttcatcccag-------------
| ||||||| || || ||||| || |||||||||||||| || |  || ||||||| |||| | |||||||||| ||||||||| |||||| | ||  |||||||||  ||||   | |||   ||    || |||||    ||| ||   |||   || | | ||  ||  ||  || |  |||| |              
GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggca--acagcataagcatttcgctgggcacatgtggcaagtgcattgtgtatcctcatccatagcttacaatctgtgtttgtcatatatatccgatgcctccattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88383054|gb|CI538082.1|CI538082
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88490176|gb|CI427448.1|CI427448
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|86870748|gb|CI323624.1|CI323624
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGCCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88548596|gb|CI476408.1|CI476408
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88527790|gb|CI455974.1|CI455974
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|29658305|gb|CB654580.1|CB654580
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88529647|gb|CI457983.1|CI457983
EST:     TACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|86499530|gb|CI142163.1|CI142163
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|86418763|gb|CI053564.1|CI053564
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88906182|gb|CI375254.1|CI375254
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88512022|gb|CI439528.1|CI439528
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88524547|gb|CI450545.1|CI450545
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|86534822|gb|CI175028.1|CI175028
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88528846|gb|CI457117.1|CI457117
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88464380|gb|CI544841.1|CI544841
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|86540731|gb|CI180937.1|CI180937
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|87029121|gb|CI276389.1|CI276389
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|89183309|gb|CI045874.1|CI045874
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88527981|gb|CI456181.1|CI456181
EST:     ATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: ATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88220434|gb|CI219994.1|CI219994
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCCC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|2317540|gb|C22594.1|C22594
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88502975|gb|CI430481.1|CI430481
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|2317539|gb|C22593.1|C22593
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|218491447|gb|FG947046.1|FG947046
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88263363|gb|CI367137.1|CI367137
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|29688121|gb|CB684396.1|CB684396
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88975335|gb|CI023586.1|CI023586
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|33805593|gb|CF328672.1|CF328672
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|86537872|gb|CI178078.1|CI178078
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|2317531|gb|C22585.1|C22585
EST:     TAGCTCATTNCCTGACTACAAGTCTGCTTTCCCCAAGTGGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGT-GGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88515177|gb|CI442831.1|CI442831
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88266185|gb|CI377087.1|CI377087
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88538516|gb|CI467554.1|CI467554
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88218941|gb|CI220353.1|CI220353
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88536105|gb|CI465829.1|CI465829
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|58664154|gb|CK052840.1|CK052840
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GATCTTGCAAGTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88527288|gb|CI455431.1|CI455431
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|87021528|gb|CI274135.1|CI274135
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|86539207|gb|CI179413.1|CI179413
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGTCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|86501713|gb|CI144346.1|CI144346
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|86541116|gb|CI181322.1|CI181322
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|86429915|gb|CI082338.1|CI082338
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|89181446|gb|CI112952.1|CI112952
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88239570|gb|CI240047.1|CI240047
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|58604550|gb|CK015078.1|CK015078
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88220311|gb|CI219871.1|CI219871
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88441936|gb|CI557589.1|CI557589
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88834148|gb|CI000512.1|CI000512
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88531994|gb|CI461448.1|CI461448
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|8860073|gb|AU097391.1|AU097391
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88476138|gb|CI413409.1|CI413409
EST:     TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: TTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
EST: gi|88484741|gb|CI422012.1|CI422012
EST:     CCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG                         GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC
genomic: CCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaa ... ttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTACTAGGAACTCCAAATGAACAAAGTTGGCCAGGAGTTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGgtatgacaaaacagcataaagattttattaggcgggtgaactgcatccatatactgtgccactaatattccttgactgaaatcttcatcccag

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