1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AACAAGGAGCGCACAGACCGGATTGTAAGGATATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatacttcagtaattcactgcaattctttacctcattttgatagtcaataaaaatcattgaacatatatataccatttggcag
species | Oryza sativa |
transcript | LOC_Os03g02590.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|218487592|gb|FG945521.1|FG945521
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCEST: gi|88836930|gb|CI008366.1|CI008366
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATC
EST: CTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|218504458|gb|FG953020.1|FG953020
genomic: CTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TAT-CCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATC-AAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|25798400|gb|CA754361.1|CA754361
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCANAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|218490956|gb|FG953067.1|FG953067
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|313084054|gb|HO213837.1|HO213837
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|89195811|gb|CI007230.1|CI007230
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TGCTGGAT-GCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|86415722|gb|CI029733.1|CI029733
genomic: TGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: CTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|86829554|gb|CI286745.1|CI286745
genomic: CTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|38480632|gb|CF964721.1|CF964721
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|88981185|gb|CI026937.1|CI026937
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: CTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|86852434|gb|CI320359.1|CI320359
genomic: CTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TCAGTCT-TCCAGGGCTAG-TGAG C-TGGAGAGC-TAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|84117673|gb|CD151440.1|CD151440
genomic: TCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCTCTACTACTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAEST: gi|88965198|gb|CI009234.1|CI009234
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGA
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|88995411|gb|CI036986.1|CI036986
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|18386960|gb|BM420158.1|BM420158
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|29687966|gb|CB684241.1|CB684241
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|33662420|gb|CF293387.1|CF293387
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|88216352|gb|CI216201.1|CI216201
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|15858218|gb|BI811030.1|BI811030
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: GGGCTA-TTGAG CTTGGAGAGCTTAAGAGGCTATC-AAATCAATGAGGAAGCTGGCGAGAGA-EST: gi|29687965|gb|CB684240.1|CB684240
genomic: GGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|11863341|gb|AT003766.1|AT003766
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: GGATGGCCTCTNCAGTCTGNGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGNGGCTATCAAAATCAATGAGNAAGCTGGCGAGAGAGEST: gi|218482011|gb|FG963443.1|FG963443
genomic: GGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGEST: gi|38469451|gb|CF953582.1|CF953582
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAG
EST: ATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAEST: gi|88217343|gb|CI217192.1|CI217192
genomic: ATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTA-GTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGA
EST: CTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGEST: gi|58585983|gb|CF984291.1|CF984291
genomic: CTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
EST: TATCCCGGTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAG CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
genomic: TATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatac ... catttggcagCTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAAGGAGCGCACAGACCGGATTGTAAGGATATCCCTCTACTGCTGGATGGCCTCTTCAGTCTGTGCAGGGCTAGTTGAGgtataaatacttcagtaattcactgcaattctttacctcattttgatagtcaataaaaatcattgaacatatatataccatttggcag
- - - - - - - - - - - - - - - - - - - - - GCTGGA