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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAACATTGAGTTAGATACAGTAACTGAGCTGTCAGCATTCTGCGAGAAGGCAAGCATGgtaatactatacatcattattgcaattatcatgtatttaccattttaacatcattttagcatgacttgtgctgatttcatgatcaaggttgcttggtagc...

Basic information

species Oryza sativa
transcript LOC_Os03g02570.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02570.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G044247_T01 (Zea mays), 5'ss of exon 5
GCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAACATTGAGTTAGATACAGTAACTGAGCTGTCAGCATTCTGCGAGAAGGCAAGCATGgtaata--------ctatacatcattattgcaatta--tcatgtatttaccattttaacatca----ttttagcatgac--ttgtgctgatttcatgatcaaggttgcttggtagc------------------
|||||||| |||||| | | ||| || || |||||||| || || ||| |||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||        ||   || | |  ||     |   ||    | ||||||      |||||    ||| ||| || |       || ||   |  || ||  ||||   || |                   
GCAGCGGCGTTTGGTCTGAGCAGCGTCGTCTACGTTCCGAAAATCGAGCTAGAGACAGTGACTGAACTGTCAGCGTTCTGCGAGAAGGCAAGCGTGgtaataagctgcaactgctcaccgtcgttagggctgcttctgaaacttaccacaccgccatcaccattttgagcttggcagccagactaataataatatgaac-ttgcgctgtggtttcctggtcattaattag