1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TATATCTGTTGATCTTAACACGATGGCTGCTGCTTTTATGACGTCCGTGTCCATGTTGGAGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAGgtactttatcctctattggcgatgcctagggattccaggttgtgttaggttttgctcatatgtgattttctgcag
species | Oryza sativa |
transcript | LOC_Os03g02540.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CATGTTGGAGAAAGAGCTAGCTGCACTGATCACCTGAGAACCAAATACAG GCTCGGATAGACTCCCACAACCAAGATTCTTTATGCGAGGCATGCTGACCAEST: gi|18386155|gb|BM419354.1|BM419354
genomic: CATGTTGGAGAAAGAGCTAGCTGCACTGATCAC-TGAGAACAAAATACAGgtactttatc ... ttttctgcagGCTCGGATAGACTCCCACAAC-AAGATTCTTTATGCGAGGCATGCTGACCA
EST: CCATGTTGGAGAAAGAGCTAGCTGCACTGATCCCTGAGAAC-AAATACAG GCTCGGATAGACTCCCAC-ACAAGATTCTTTATGCGAGGCATGCTGACC-AEST: gi|33675575|gb|CF303814.1|CF303814
genomic: CCATGTTGGAGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAGgtactttatc ... ttttctgcagGCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGCTGACCAA
EST: CCATGTTGGAGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAG GCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGCTGACCAAEST: gi|29633491|gb|CB638500.1|CB638500
genomic: CCATGTTGGAGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAGgtactttatc ... ttttctgcagGCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGCTGACCAA
EST: CCATGTTGGAGAAAGAGCTAGCTGCATTGATCACTGAGAACAAAATACAG GCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGTTGACCAAEST: gi|88549127|gb|CI478986.1|CI478986
genomic: CCATGTTGGAGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAGgtactttatc ... ttttctgcagGCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGCTGACCAA
EST: GATCACTGAGAACCAAATACAG GCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGCTGACCAAEST: gi|58684522|gb|CK073209.1|CK073209
genomic: GATCACTGAGAACAAAATACAGgtactttatc ... ttttctgcagGCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGCTGACCAA
EST: CCATGTTGGAGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAG GCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGCTGACCAAEST: gi|29633518|gb|CB638527.1|CB638527
genomic: CCATGTTGGAGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAGgtactttatc ... ttttctgcagGCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGCTGACCAA
EST: AGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAG GCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGTTGACCAAEST: gi|287217|gb|D16021.1|D16021
genomic: AGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAGgtactttatc ... ttttctgcagGCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGCTGACCAA
EST: CCATGTTGGAGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAG GCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGCTGACCAAEST: gi|88490434|gb|CI427706.1|CI427706
genomic: CCATGTTGGAGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAGgtactttatc ... ttttctgcagGCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGCTGACCAA
EST: TGAGAACCAAATACAG GCTCGGATAGACTCCCACNACAAGATTCTTTATGCGAGGCATGCTGACCAAEST: gi|58607216|gb|CK035249.1|CK035249
genomic: TGAGAACAAAATACAGgtactttatc ... ttttctgcagGCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGCTGACCAA
EST: CCATGTTGGAGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAG GCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGCTGACCAA
genomic: CCATGTTGGAGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAGgtactttatc ... ttttctgcagGCTCGGATAGACTCCCACAACAAGATTCTTTATGCGAGGCATGCTGACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATATCTGTTGATCTTAACACGATGGCTGCTGCTTTTATGACGTCCGTGTCCATGTTGGAGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAGgtactttatcctctattggcgatgcctagggattccaggttgtgttaggttttgctcatatgtgattttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC