1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCTCTCTGCAATTGCTGGGGAGACTGCCTCTGAGCTTCCAGACGCTGTCAGGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtccaacgattcaacatatccttcacattttgcaattctagggattcttccatatctctgcgtgtttcaaaaataatgtactgagttctgaaataccttacccggaacttgcgccaatgtgcag
species | Oryza sativa |
transcript | LOC_Os03g01810.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAG AGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAAEST: gi|33666696|gb|CF297663.1|CF297663
genomic: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtcca ... caatgtgcagAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
EST: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAG AGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAAEST: gi|88542242|gb|CI471559.1|CI471559
genomic: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtcca ... caatgtgcagAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
EST: GATGAAGCAACCTTCAACAAGTGAACCTGCAGAG AGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAAEST: gi|27547715|gb|CA767395.2|CA767395
genomic: GATGAAGCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtcca ... caatgtgcagAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
EST: GGAAGGAAAGGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAG AGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGA-G-C----TTGAAEST: gi|88544923|gb|CI472450.1|CI472450
genomic: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtcca ... caatgtgcagAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
EST: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAG AGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAAEST: gi|218480097|gb|FG955250.1|FG955250
genomic: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtcca ... caatgtgcagAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
EST: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAG AGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGA-G-C----TTGAAEST: gi|88554456|gb|CI484638.1|CI484638
genomic: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtcca ... caatgtgcagAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
EST: TGAACCTGCAGAG AGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAAEST: gi|86493096|gb|CI135729.1|CI135729
genomic: TGAACCTGCAGAGgtaatgtcca ... caatgtgcagAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
EST: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAG AGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAAEST: gi|88979017|gb|CI025535.1|CI025535
genomic: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtcca ... caatgtgcagAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
EST: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAG AGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAAEST: gi|55439582|gb|CV733101.1|CV733101
genomic: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtcca ... caatgtgcagAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
EST: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAG AGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAAEST: gi|88548645|gb|CI476460.1|CI476460
genomic: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtcca ... caatgtgcagAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
EST: GAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAG AGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAAEST: gi|112785790|gb|EE591423.1|EE591423
genomic: GAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtcca ... caatgtgcagAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
EST: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAG AGAACTGCTATTGCGGGAGCCGTCGATGACGATGACGACGACGEST: gi|86542982|gb|CI183188.1|CI183188
genomic: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtcca ... caatgtgcagAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACG
EST: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAG AGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAAEST: gi|88536817|gb|CI464606.1|CI464606
genomic: GGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtcca ... caatgtgcagAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
EST: GCAACCTTCAACAAGTGAACCTGCAGAG AGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
genomic: GCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtcca ... caatgtgcagAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCTCTGCAATTGCTGGGGAGACTGCCTCTGAGCTTCCAGACGCTGTCAGGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAACCTGCAGAGgtaatgtccaacgattcaacatatccttcacattttgcaattctagggattcttccatatctctgcgtgtttcaaaaataatgtactgagttctgaaataccttacccggaacttgcgccaatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG