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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTATGGGCTAATTTTTCTCTTCAAGTGGATGGCTGGGGAAAAGGATGAACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAGgttagttccattttgctccgttagctacctctgttcagaattggatttaacatttgatctaactaaatcaatcactgccag

Basic information

species Oryza sativa
transcript LOC_Os02g57630.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57630.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G108739_T01 (Zea mays), 5'ss of exon 5
AGTTTATGGGCTAATTTTTCTCTTCAAGTGGATGGCTGGGGAAAAGGATGAACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAGgttagttccattttgct------ccgttagctacctctgttcagaatt--ggatttaacatttgatcta-actaaatcaatcactgccag
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AGTATATGGGCTAATTTTTCTCTTCAAGTGGATACCCGGGGAGAAGGATGAACGGCCTGTTGTCAGAGATCCTAACCCAAACCTTTTCTTTGCGCACCAAgttagttctgttctgtttctgtccctttagctaaccacgtttgctactctgtgcttaacaataacaggatatccttttacttattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|699770|gb|D46061.1|D46061
EST:     AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAG                         GTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
genomic: AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAGgttagttcca ... tcactgccagGTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
EST: gi|29668373|gb|CB664648.1|CB664648
EST:     AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAG                         GTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
genomic: AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAGgttagttcca ... tcactgccagGTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
EST: gi|58664755|gb|CK053441.1|CK053441
EST:     AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAG                         GTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
genomic: AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAGgttagttcca ... tcactgccagGTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
EST: gi|699786|gb|D46077.1|D46077
EST:     AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAG                         GTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
genomic: AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAGgttagttcca ... tcactgccagGTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
EST: gi|218484923|gb|FG943842.1|FG943842
EST:     AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAG                         GTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
genomic: AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAGgttagttcca ... tcactgccagGTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
EST: gi|29668412|gb|CB664687.1|CB664687
EST:     AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAG                         GTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
genomic: AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAGgttagttcca ... tcactgccagGTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
EST: gi|218495715|gb|FG959020.1|FG959020
EST:     AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAG                         GTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
genomic: AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAGgttagttcca ... tcactgccagGTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
EST: gi|33797877|gb|CF324798.1|CF324798
EST:     AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAG                         GTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT
genomic: AACGGCCTGTCGTCAAAGATCCAAACCCAAACCTTTTCTTTGCTAGCCAGgttagttcca ... tcactgccagGTCATCCCTAATGCATGTGCTACTCAAGCTATTCTGTCAATCCTCATGAAT