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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGACGTGGTTACAACAGACCAAGTTGAGGTGCTCCCGCTGCTTTTGAGGAATGTTGAACGCAACAAATCTTGGATTTCACAGTCAAACTCTGACTCAGgtctgttatctaagtacaaaaatgaatgtccactcattaccattgtctttatacatgaaacatgccatagccatagtttgaaagagttaagaacttaaga...

Basic information

species Oryza sativa
transcript LOC_Os02g57330.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57330.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G471805_T01 (Zea mays), 5'ss of exon 5
TGTGACGTGGTTACAACAGACCAAGTTGAGGTGCTCCCGCTGCTTTTGAGGAATGTTGAACGCAACAAATCTTGGATTTCACAGTCAAACTCTGACTCAGgtctgttatctaagtacaaaaatgaatgtccactcattaccattgtctttatacatgaaacatgccatagccatagttt--gaaagagtta---agaacttaaga-----
||||| ||    ||||| |||||||| |||||||| ||||||||| |||| |||||||||||||||| |||||||||||| || || || || ||| ||||| |      |  | | | ||| |  |||     ||||  ||| | | |  | ||  ||   |  ||||||  ||||||  || | |||||    | | |  ||      
TGTGATGTTACAACAACTGACCAAGTCGAGGTGCTTCCGCTGCTTATGAGAAATGTTGAACGCAACAGATCTTGGATTTCGCAATCGAATTCCGACACAGgttt------tgtggagagaaacgtctgttgtgccatt--catagccctgtttcagtaat--tctcatagctgtagttttggatatagttatatggcattctagcttttg

upper sequence: LOC_Os02g57330.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G013981_T02 (Zea mays), 5'ss of exon 4
TGTGACGTGGTTACAACAGACCAAGTTGAGGTGCTCCCGCTGCTTTTGAGGAATGTTGAACGCAACAAATCTTGGATTTCACAGTCAAACTCTGACTCAGgtct-gttatctaagta--caaaaatgaatgtcc--actcattaccatt-gtctttatacatgaaacat--gccatagccatagtttgaaagagttaa-gaacttaaga------------------------------------------------------------------
 |||| ||    ||||| |||||||  ||||||||||| |||||| |||| ||||||||||| |||| ||||||||| ||||| || ||| | ||||||||| | ||||    |     | |  |||    |||    ||  |  |||| ||  | | |  || |   |  |  |||  ||||   |     ||||   ||| | || |                                                                  
GGTGATGTTACAACAACTGACCAAGCCGAGGTGCTCCCACTGCTTATGAGAAATGTTGAACGGAACAGATCTTGGATCTCACAATCGAACCCCGACTCAGgttttgttaagagaaccatctattatgccattcctagttctgtttcattagttctcacagctgtagttttagatataatcatatggtattgtagtttttgaaataaatacatagggattatgttaagtaaattgttctttagttctgacagatatattggcaaacacaaaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27576395|gb|CA999089.1|CA999089
EST:     GAATGTTGAACGCAACAAATCTTGGATTTCACAGTCAAACTCTGACTCAG                         GCTCCATCGGCTCTGTCACCGTTGCAGAATTGGACTGGGGTAACAAAGATC
genomic: GAATGTTGAACGCAACAAATCTTGGATTTCACAGTCAAACTCTGACTCAGgtctgttatc ... tggcaaacagGCTCCATCGGCTCTGTCACCGTTGCAGAATTGGACTGGGGTAACAAAGATC