1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAGgttgtgttttgttgttaatatgatcataatagcatgatagtaagttctcatgttaatttaacttttgcattcatctacag
species | Oryza sativa |
transcript | LOC_Os02g55200.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAG TTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTTGCTATEST: gi|2427558|gb|C72021.1|C72021
genomic: ATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAGgttgtgtttt ... tcatctacagTTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTTGCTAT
EST: ATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAG TTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTTGCTATEST: gi|58589478|gb|CF987786.1|CF987786
genomic: ATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAGgttgtgtttt ... tcatctacagTTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTTGCTAT
EST: GTGAAGAAAGTGCTGAATTCCTCTCGAAA-TGCCCAAAAAGGATCTGGAG TTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTTGCTATEST: gi|218487528|gb|FG948329.1|FG948329
genomic: -TGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAGgttgtgtttt ... tcatctacagTTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTTGCTAT
EST: ATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAG TTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTTGCTATEST: gi|29659820|gb|CB656095.1|CB656095
genomic: ATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAGgttgtgtttt ... tcatctacagTTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTTGCTAT
EST: ATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAG TTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTTGCTATEST: gi|8956748|gb|BE230551.1|BE230551
genomic: ATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAGgttgtgtttt ... tcatctacagTTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTTGCTAT
EST: ATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAG TTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTTGCTAT
genomic: ATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAGgttgtgtttt ... tcatctacagTTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTTGCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAGgttgtgttttgttgttaatatgatcataatagcatgatagtaagttctcatgttaatttaacttttgcattcatctacag
- - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAAA