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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATTACGTTCCCCAGTTGGCAAGGAAGATCGTTGAGTTCAACAAGGCCTCACCATATCCTTTCATCAACCTCAAGGGGATCCTTgtgagtattattaaactaaagtagacagtcctttaaatcaagcacgaacaaattctcaactgaaaactgtaaccatagattgcacctctggcaagagttt...

Basic information

species Oryza sativa
transcript LOC_Os02g55130.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g55130.5 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM5G879749_T01 (Zea mays), 5'ss of exon 6
GACATTACGTTCCCCAGTTGGCAAGGAAGATCGTTGAGTTCAACAAGGCCTCACCATATCCTTTCATCAACCTCAAGGGGATCCTTgtgagtattattaaactaaagtagacagtcctttaaatcaagcacgaacaaattctcaactgaa-aactgtaaccatagattg-cacctctggcaagagttt---------
| || ||||| ||||||||||||||||||||||| |||| |||| ||||||| ||  | || ||||||||||||||||| ||||||||||||||  |   |   | | |  | |          ||| ||||| ||      |  | |     ||  |  |  |  ||  | ||||    || |             
GCCACTACGTCCCCCAGTTGGCAAGGAAGATCGTCGAGTACAACGAGGCCTCGCCTCACCCCTTCATCAACCTCAAGGGAATCCTTgtgagtatcgt---atctatgcatgctgct------gccaaacacgagcaggccgccggccggccggctccagtctaatcttaacccctccaaaaaaaaaacaccgatcag