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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATGGTGTAGTTCGTGACGGTCCTGATGGAAGCTTAGCAACTGTTACTGAGTTTATGATCAATGGATCTCTCAAACAGTTTTTGAGAAAAAAAGACAGgtattacttgtttaatcaaagaacactatgattcttttattctcaaatatccaaattctaaattaaagcaactgcacag

Basic information

species Oryza sativa
transcript LOC_Os02g54510.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g54510.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G039106_T03 (Zea mays), 5'ss of exon 3
TTTATGGTGTAGTTCGTGACGGTCCTGATGGAAGCTTAGCAACTGTTACTGAGTTTATGATCAATGGATCTCTCAAACAGTTTTTGAGAAAAAAAGACAGgtattacttgtttaatcaaagaacactatgattcttttattctcaaatatccaaattct-aaattaaagcaactgcacag
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||  |||| |||||||||||| | ||| | ||  |    |  | |  |  ||   |||  |||   || ||    || | ||| |||||||  ||  |||
TTTATGGTGTAGTTCGTGATGGTCCAGATGGAAGCTTAGCAACTGTTACTGAGTTTATGGTTAATGGGTCTCTCAAACAGTTCCTGAGGAAAAAAGACAGgcactacattttctaaagcaagaaataagaatatatttggtcttctatttctcctttatcaaaataaagcacttgtgcag

upper sequence: LOC_Os02g54510.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G052658_T01 (Zea mays), 5'ss of exon 4
TTTATGGTGTAGTTCGTGACGGTCCTGATGGAAGCTTAGCAACTGTTACTGAGTTTATGATCAATGGATCTCTCAAACAGTTTTTGAGAAAAAAAGACAGgtattacttgtttaatcaaagaac----actat--gattcttttattctcaaatatccaaattctaaattaaagcaactgcacag
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||  | || |||| |||||     | |||  |||  |||  |||||   ||||  || |||||||||||||   ||  |||
TTTATGGTGTAGTTCGTGATGGTCCAGATGGAAGCTTAGCAACTGTTACTGAGTTTATGATCAATGGATCTCTAAAACAGTTTCTGAGGAAAAAAGACAGgtactatatattgaatccaagaaataagaatatttgatcttttatttctcctgtatc-gaactctaaattaaagcgcttgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66924155|gb|CX111003.1|CX111003
EST:     GAGTTTATGATCAATGGATCTCTCAAACAGTTTTTGAGNNNNNNNGACAG                         GACAATTGATCGCCGTAAAAGAGTTATATTAGCCATGGATGCTGCATTTGG
genomic: GAGTTTATGATCAATGGATCTCTCAAACAGTTTTTGAGAAAAAAAGACAGgtattacttg ... aactgcacagGACAATTGATCGCCGTAAAAGAGTTATATTAGCCATGGATGCTGCATTTGG