Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTGGGATGAAGCAGCGTCCACCGCGTGGATACAATCCTTATCATGGTTACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttagcttttttgacaacatggatgtctaattctttatgtctggtgtctaacatccatattgtgtattcttgttcag

Basic information

species Oryza sativa
transcript LOC_Os02g52140.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g52140.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G108919_T06 (Zea mays), 5'ss of exon 3
TCCCTGGGATGAAGCAGCGTCCACCGCGTGGATACAATCCTTATCATGGTTACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttagcttttttgacaacatggatgtctaattctttatgtctggtgtctaacatccatattgtgtattcttgttcag
||||||||||||||||||||||||| || || || ||||| || ||||| ||||| |||||||| ||||| || || || ||||| ||||| ||||| |||||||| | | |  | |   |   |  || |  | ||||    || |  | |||||| |    || || |||  || | |||
TCCCTGGGATGAAGCAGCGTCCACCACGCGGGTATAATCCCTACCATGGCTACCCTTATAGATCATATGGAGCACCGTACTTCCCCCCATACGGTTATGGgtaagtattg-tggtgtactactgtcaatatggatttcta---gttttctttctaacgta---atcgtttatggttttgcag

upper sequence: LOC_Os02g52140.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM5G862331_T04 (Zea mays), 5'ss of exon 5
TCCCTGGGATGAAGCAGCGTCCACCGCGTGGATACAATCCTTATCATGGTTACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttagcttttttgacaacatggatgtctaattctttatgtctggtgtctaacatccatattgtgtattcttgttcag
| ||||||||||||||||||||||| ||||| || ||||| || ||||| ||||| |||||||| || ||||| || |||||||| ||||||||||| |||||||| |   || |    ||  ||     | |   | | ||  | |  | ||||||||  |  || ||   | |||  |||
TTCCTGGGATGAAGCAGCGTCCACCACGTGGGTATAATCCATACCATGGCTACCCTTATAGATCATACGGGGCACCGTATTTCCCCCCATATGGTTATGGgtaagtct---ttgtggtgcactattacaatgtggatttctagttttcttttctaacata-accttttgcggttttg--cag

upper sequence: LOC_Os02g52140.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G143163_T01 (Zea mays), 5'ss of exon 2
TCCCTGGGATGAAGCAGCGTCCACCGCGTGGATACAATCCTTATCATGGTTACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttagcttttttgacaacatggatgtctaattctttatgtctggtgtctaacatccatattgtgtattcttgttcag
||||||||||||||||||||||||| || || || ||||| || ||||| ||||| |||||||| ||||| || || || ||||| ||||| ||||| |||||||| | | |  | |   |   |  ||||  | ||||    || |  | |||||| |    || || |||  || | |||
TCCCTGGGATGAAGCAGCGTCCACCACGCGGGTATAATCCCTACCATGGCTACCCTTATAGATCATATGGAGCACCGTACTTCCCCCCATACGGTTATGGgtaagtattg-tggtgtactactgtcaatgtggatttcta---gttttctttctaacgta---atcgtttatcgttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88487256|gb|CI424527.1|CI424527
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|86854695|gb|CI258986.1|CI258986
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|86258520|gb|CI064873.1|CI064873
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|32948090|gb|BP184662.1|BP184662
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGGTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|87024798|gb|CI261307.1|CI261307
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88482866|gb|CI420137.1|CI420137
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|87025376|gb|CI267742.1|CI267742
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88517174|gb|CI444510.1|CI444510
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCNCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|86544962|gb|CI185168.1|CI185168
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|86491058|gb|CI133691.1|CI133691
EST:     TACCAATATAGATCGTATGGGGCCCAATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|87018233|gb|CI265525.1|CI265525
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88483997|gb|CI421268.1|CI421268
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88847474|gb|CI015967.1|CI015967
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|66926559|gb|CX113407.1|CX113407
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|86505168|gb|CI147801.1|CI147801
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|86417997|gb|CI032206.1|CI032206
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88506260|gb|CI433766.1|CI433766
EST:     TATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCNCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88492082|gb|CI429354.1|CI429354
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88519815|gb|CI447469.1|CI447469
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCNCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|58598948|gb|CK009476.1|CK009476
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTATGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88505737|gb|CI433243.1|CI433243
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88554840|gb|CI485049.1|CI485049
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88473106|gb|CI410377.1|CI410377
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|86255584|gb|CI065261.1|CI065261
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|33664620|gb|CF295587.1|CF295587
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88222758|gb|CI220823.1|CI220823
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88255030|gb|CI353854.1|CI353854
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88478290|gb|CI415561.1|CI415561
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88469773|gb|CI407044.1|CI407044
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|87032407|gb|CI264188.1|CI264188
EST:     TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88491850|gb|CI429122.1|CI429122
EST:     TATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
EST: gi|88980934|gb|CI021061.1|CI021061
EST:     TACCCATATAGATCGTATGGGACCCCATATTTCCCACCATATGGTTACGG                         GAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG
genomic: TACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGgtaagtttag ... tcttgttcagGAGAGTCCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAG