1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTCCTTGGCAACAAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttactaccttttctgtgtgagcttgtcatccttgagtggctaattactgaatgatgtttcaactgaagtggtctttctcatgtatttcag
species | Oryza sativa |
transcript | LOC_Os02g49980.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACT AGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTGEST: gi|8324374|gb|AU091530.1|AU091530
genomic: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttac ... tgtatttcagAGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTG
EST: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACT AGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTGEST: gi|88550141|gb|CI480093.1|CI480093
genomic: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttac ... tgtatttcagAGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTG
EST: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACT AGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTGEST: gi|33808162|gb|CF329970.1|CF329970
genomic: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttac ... tgtatttcagAGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTG
EST: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACT AGGCCTGGAATTGATAAAEST: gi|33808160|gb|CF329969.1|CF329969
genomic: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttac ... tgtatttcagAGGCCTGGAATTGATAAA
EST: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACT AGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTGEST: gi|33817714|gb|CF334690.1|CF334690
genomic: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttac ... tgtatttcagAGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTG
EST: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACT AGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTGEST: gi|86600191|gb|CI251561.1|CI251561
genomic: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttac ... tgtatttcagAGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTG
EST: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACT AGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTGEST: gi|44676654|gb|CR290088.1|CR290088
genomic: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttac ... tgtatttcagAGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTG
EST: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACT AGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTGEST: gi|86601190|gb|CI251570.1|CI251570
genomic: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttac ... tgtatttcagAGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTG
EST: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACT AGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTGEST: gi|86834282|gb|CI344042.1|CI344042
genomic: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttac ... tgtatttcagAGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTG
EST: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACT AGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTGEST: gi|58665641|gb|CK054327.1|CK054327
genomic: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttac ... tgtatttcagAGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTG
EST: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACT AGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTGEST: gi|88205714|gb|CI205563.1|CI205563
genomic: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttac ... tgtatttcagAGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTG
EST: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACT AGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTGEST: gi|33818441|gb|CF335055.1|CF335055
genomic: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttac ... tgtatttcagAGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTG
EST: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACT AGGCCTGGAATTGATAAAGGGACCGGGAAGTTTGCTGCTACATGATCTCTTEST: gi|58586064|gb|CF984372.1|CF984372
genomic: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttac ... tgtatttcagAGGCCTGGAATTGATAAAGG-ACCGGGAAGTTTGCTGCTACATGATCTCTT
EST: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACT AGGCCTGGAATTGATAAAGGACCGGGAAGTT
genomic: AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttac ... tgtatttcagAGGCCTGGAATTGATAAAGGACCGGGAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTCCTTGGCAACAAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTgtgagtttactaccttttctgtgtgagcttgtcatccttgagtggctaattactgaatgatgtttcaactgaagtggtctttctcatgtatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG