1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATGCGTGGGGCATCAGGGAACTCAGTTCAAGTGATTTTTGACAGCGGAAGTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtatttttcttaattgtttaaaagggttcaactattcaaccacattttgacttaccttttctccttgaccttggcag
species | Oryza sativa |
transcript | LOC_Os02g49800.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|29642626|gb|CB647633.1|CB647633
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|29645619|gb|CB650626.1|CB650626
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|29675851|gb|CB672126.1|CB672126
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|66916872|gb|CX103720.1|CX103720
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|29618914|gb|CB623926.1|CB623926
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|27576282|gb|CA998976.1|CA998976
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|86504446|gb|CI147079.1|CI147079
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCCAAGATAGTTCAGATCGTACATTEST: gi|27576286|gb|CA998980.1|CA998980
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGT-CCAAGATAGTTCAGATCGTACATT
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|86859086|gb|CI277012.1|CI277012
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCGCAGATGAAATATACGAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|87015957|gb|CI279709.1|CI279709
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: CATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|29631316|gb|CB636325.1|CB636325
genomic: CATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|29669337|gb|CB665612.1|CB665612
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|29669338|gb|CB665613.1|CB665613
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|27577711|gb|CB000406.1|CB000406
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|29664922|gb|CB661197.1|CB661197
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|29664382|gb|CB660657.1|CB660657
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTAEST: gi|29644454|gb|CB649461.1|CB649461
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
EST: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCT ATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
genomic: GTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtattt ... accttggcagATCAAATATGCCTACCCAAATTTTGTCCAAGATAGTTCAGATCGTACATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGCGTGGGGCATCAGGGAACTCAGTTCAAGTGATTTTTGACAGCGGAAGTTCATATACATACCTCCCAGATGAAATATACAAAAACCTTATTGCAGCTgtgagtatttttcttaattgtttaaaagggttcaactattcaaccacattttgacttaccttttctccttgaccttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT