1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCCTCCTTGTTCTAAACATATATTGGTGGGTCTTAATGTATCGAATGCTCGTGGAGCAAATACTGTCTAAAGGGCATGTTGGGGATGATGTCCGATCTGgtaggttctctcccccttttattcccccttagatcaatttaatgcaaggatggattttgataatgaattttttgaagttaaccattggttaaatgaatat...
species | Oryza sativa |
transcript | LOC_Os02g49590.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGTGGAGCAAATACTGTCTAAAGGGCATGTTGGGGATGATGTCCAATCTG ATTCTNAAGGTGAAGAAGAACATGAGGATTGATTTATATGTGTAGATCCTGEST: gi|88502639|gb|CI430145.1|CI430145
genomic: CGTGGAGCAAATACTGTCTAAAGGGCATGTTGGGGATGATGTCCGATCTGgtaggttctc ... ctttctgtagATTCTGAAGGTGAAGAAGAACATGAGGATTGATTTATATGTGTAGATCCTG
EST: CGTGGAGCAAATACTGTCTAAAGGGCATGTTGGGGATGATGTCCGATCTG ATTCTGAAGGTGAAGAAGAACATGAGGATTGATTTATATGTGTAGATCCTGEST: gi|88470199|gb|CI407470.1|CI407470
genomic: CGTGGAGCAAATACTGTCTAAAGGGCATGTTGGGGATGATGTCCGATCTGgtaggttctc ... ctttctgtagATTCTGAAGGTGAAGAAGAACATGAGGATTGATTTATATGTGTAGATCCTG
EST: CGTGGAGCAAATACTGTCTAAAGGGCATGTTGGGGATGATGTCCGATCTG ATTCTGAAGGTGAAGAAGAACATGAGGATTGATTTATATGTGTAGATCCTGEST: gi|163928004|gb|EG714276.1|EG714276
genomic: CGTGGAGCAAATACTGTCTAAAGGGCATGTTGGGGATGATGTCCGATCTGgtaggttctc ... ctttctgtagATTCTGAAGGTGAAGAAGAACATGAGGATTGATTTATATGTGTAGATCCTG
EST: ATGATGTCCGATCTG ATTCTGAAGGTGAAGAAGAACATGAGGATTGATTTATATGTGTAGATCCTGEST: gi|88510185|gb|CI437691.1|CI437691
genomic: ATGATGTCCGATCTGgtaggttctc ... ctttctgtagATTCTGAAGGTGAAGAAGAACATGAGGATTGATTTATATGTGTAGATCCTG
EST: CGTGGAGCAAATACTGTCTAAAGGGCATGTTGGGGATGATGTCCGATCTG ATTCTGAAGGTGAAGAAGAACATGAGGATTGATTTATATGTGTAGATCCTGEST: gi|88273562|gb|CI393968.1|CI393968
genomic: CGTGGAGCAAATACTGTCTAAAGGGCATGTTGGGGATGATGTCCGATCTGgtaggttctc ... ctttctgtagATTCTGAAGGTGAAGAAGAACATGAGGATTGATTTATATGTGTAGATCCTG
EST: CGTGGAGCAAATACTGTCTAAAGGGCATGTTGGGGATGATGTCCGATCTG ATTCTGAAGGTGAAGAAGAACATGAGGATTGATTTATATGTGTAGATCCTG
genomic: CGTGGAGCAAATACTGTCTAAAGGGCATGTTGGGGATGATGTCCGATCTGgtaggttctc ... ctttctgtagATTCTGAAGGTGAAGAAGAACATGAGGATTGATTTATATGTGTAGATCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCTCCTTGTTCTAAACATATATTGGTGGGTCTTAATGTATCGAATGCTCGTGGAGCAAATACTGTCTAAAGGGCATGTTGGGGATGATGTCCGATCTGgtaggttctctcccccttttattcccccttagatcaatttaatgcaaggatggattttgataatgaattttttgaagttaaccattggttaaatgaatat
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctt