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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGTTGTCGTCGGTGGTGGATACATAGGAATGGAATGTGCAGCGGCATTGGTCACAAACAACATAAAAGTTACCATGGTCTTCCCTAAAAAACACTGCAgtaagtatctgattgaattcggtatacattttatttttgtggggatctcgatatgaatataaatgatgtgtgttttgtgttctgaatgcag

Basic information

species Oryza sativa
transcript LOC_Os02g47790.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47790.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G320307_T02 (Zea mays), 5'ss of exon 12
GCCGTTGTCGTCGGTGGTGGATACATAGGAATGGAATGTGCAGCGGCATTGGTCACAAACAACATAAAAGTTACCATGGTCTTCCCTAAAAAACACTGCAgtaagtatctgattgaattcggtatacattttatttttgtggggatctcgatatgaatataaatgatgtgt---gttttgtgttctgaatgcag--------------------------------------------
||||| |||||||| || |||||||||||||||||||||||||| ||  ||||  | ||||  || ||||| ||  | ||||||||   ||||||||    | ||||  |   ||||    |  |||  ||||     | | | | ||  | |   ||| |   | ||| |   ||||| ||||    |  |                                              
GCCGTGGTCGTCGGCGGCGGATACATAGGAATGGAATGTGCAGCCGCTCTGGTTGCCAACAGGATGAAAGTCACTGTCGTCTTCCCCGGAAAACACT----TGAgtacgttgctgaaccaagc-tactgttta-----gcgcgtagcttcacacacatacagtcgctgttttttgttttttgtttcctacacgagtttaacagatgccggaatttatacggtgaattttctttcgcag

upper sequence: LOC_Os02g47790.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G320307_T01 (Zea mays), 5'ss of exon 5
GCCGTTGTCGTCGGTGGTGGATACATAGGAATGGAATGTGCAGCGGCATTGGTCACAAACAACATAAAAGTTACCATGGTCTTCCCTAAAAAACACTGCAgtaagtatctgattgaattcggtataca-------ttttatttttgtggggatctc-gatatgaatataaatgatgtgtgtt--ttgtgttctgaatgcag-----------
|| |||||| | |||||||| ||||| |||||||| ||||||||||||||||| || ||||| || |  || ||||||||||||||| | |||||||||||||||||  || ||  ||    || |||       | |||||| |||  ||   ||  | |||  |  | | |     || |  |    || ||||   |            
GCTGTTGTCATTGGTGGTGGCTACATTGGAATGGAGTGTGCAGCGGCATTGGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagttgctttcatcacctaaacagagtttctcttatttatgtaagggcttccaacatgctttaatacgtctcctgctggtctaattatgaacttaatttgtctgcag

upper sequence: LOC_Os02g47790.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA19G14500.1 (Glycine max), 5'ss of exon 5
GCCGTTGTCGTCGGTGGTGGATACATAGGAATGGAATGTGCAGCGGCATTGGTCACAAACAACATAAAAGTTACCATGGTCTTCCCTAAAAAACACTGCAgtaagta---tctgattgaatt-----cggtatacattttatttttg-tggggat-ctcgatatgaatataaatg-atgtgt-gttttgtgttctgaatgcag---------------------------------------------
|| |||||| | ||||||||||||||||| ||||| ||||||||| | || || |  || || ||||| || || |||||||| ||| |  |||| |||||||||||   |||  |  || |     |     | |  ||||   |  || | ||  |   | |||||| || |  |  ||| | | |      ||||  ||                                              
GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTTCCTGAGGAACATTGCAgtaagtaaattcttctaaaacttctggcaactcaaaagttatgcataatgagaatgtttagtctgaataaaatttcacttgtagctctaatagatgaaaacaacttaaaaaactgatagatatcctcaatgttttgtttattttacag

upper sequence: LOC_Os02g47790.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA16G07970.1 (Glycine max), 5'ss of exon 5
GCCGTTGTCGTCGGTGGTGGATACATAGGAATGGAATGTGCAGCGGCATTGGTCACAAACAACATAAAAGTTACCATGGTCTTCCCTAAAAAACACTGCAgtaagtatctgattgaa---ttcggtatacattttatttttg-----tggggatctcgatatgaata--------taaatgatgtgtgttttgtgttctgaatgcag-----------------------------------------------------
|| |||||| | ||||||||||||||||| ||||| ||||||||| | || || |  || || ||||| || || |||||||||||| |  |||| |||||||||||     || ||   ||| ||  ||     |||||||     || | || |  || ||  |         | ||  | ||     ||||      |||| |                                                      
GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTCCCTGAGGAACATTGCAgtaagtactgtttttaaaacttccgttaactcacaatttttgcataatgagtatgtttatttgcgtgagttattctgaaaaaagttcaacttgtagctctaatgaatgaaaacaacttaaaaagcttttagatattctccatgttttgtttattttacag