1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGAATGGAGCTGCAGGTTGGGACATTGGCTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGAgtgagtaactgattctgagaatcaagcttgcaggttactttgtgctgaacctaatgtgaaagaacacagacaatagttagtccagaaaaaaaattataaa...
species | Oryza sativa |
transcript | LOC_Os02g47660.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGA GTGATTGTTTGCTAGACAATCTCCAAATGGAAATGTAAGAAGGAATGAAGGEST: gi|9866238|gb|AU101988.1|AU101988
genomic: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGAgtgagtaact ... tctcctgcagGTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGG
EST: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGA GTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGGEST: gi|58677170|gb|CK065857.1|CK065857
genomic: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGAgtgagtaact ... tctcctgcagGTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGG
EST: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGA GTGATTGTTTGCTAGACAATCTCCAACATGGAAATGTAAGAAGGAATGAAGEST: gi|86423333|gb|CI060906.1|CI060906
genomic: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGAgtgagtaact ... tctcctgcagGTGATTGTTTGCTAGACAATCTCAAA-ATGGAAATGTAAGAAGGAATGAAG
EST: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGA GTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGGEST: gi|88852660|gb|CI008853.1|CI008853
genomic: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGAgtgagtaact ... tctcctgcagGTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGG
EST: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGA GTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGGEST: gi|86483713|gb|CI126346.1|CI126346
genomic: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGAgtgagtaact ... tctcctgcagGTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGG
EST: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGA GTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGGEST: gi|88248199|gb|CI248048.1|CI248048
genomic: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGAgtgagtaact ... tctcctgcagGTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGG
EST: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGA GTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGGEST: gi|88975733|gb|CI023984.1|CI023984
genomic: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGAgtgagtaact ... tctcctgcagGTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGG
EST: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGA GTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGGEST: gi|8860006|gb|AU097324.1|AU097324
genomic: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGAgtgagtaact ... tctcctgcagGTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGG
EST: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGA GTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGGEST: gi|86539049|gb|CI179255.1|CI179255
genomic: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGAgtgagtaact ... tctcctgcagGTGATTGTTTGCTAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGG
EST: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGA GTGATTGTTTGCTAG-CAATCTC
genomic: CTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGAgtgagtaact ... tctcctgcagGTGATTGTTTGCTAGACAATCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAATGGAGCTGCAGGTTGGGACATTGGCTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGAgtgagtaactgattctgagaatcaagcttgcaggttactttgtgctgaacctaatgtgaaagaacacagacaatagttagtccagaaaaaaaattataaa
- - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa