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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCTACAATTGGAACAAGGTCAAGGTTCGGTACTGTGATGGGTCATCTTTCACCGGCGATGTGGAAAAAGTAGATCCTgtgagtccatagtccattctttcttgattttacagttacaaattgtatgaggattagtgctgctccagtgttaagtttctctttgattttgttccatatggatag

Basic information

species Oryza sativa
transcript LOC_Os02g47400.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47400.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA16G08230.1 (Glycine max), 5'ss of exon 4
ATTTCTACAATTGGAACAAGGTCAAGGTTCGGTACTGTGATGGGTCATCTTTCACCGGCGATGTGGAAAAAGTAGATCCTgtgagtc---catagtcca------ttctttcttgattttacagttacaaattgtatgaggattagtgctgctccagtgttaagtttctctttga---ttttgttccatatggatag-----
|||||||||||||||| |  ||||||||| ||||||||||||| ||||| || ||||| ||||||||| |||| ||||| || |||    || | | ||      || |   || | ||   ||  | | |||   ||  | | | |  |  |       |    ||     |||   || | |  |  ||| |||      
ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGTTCATCGTTTACCGGTGATGTGGAAGAAGTTGATCCAgtaagttttgcagaattcaaaggaattttaaattaaattccgaggaaaatattaagtgttggtaaattttatttttccaattgtctttctgatgagatttgtatatctgatgtataaatcag

upper sequence: LOC_Os02g47400.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA16G17120.1 (Glycine max), 5'ss of exon 4
ATTTCTACAATTGGAACAAGGTCAAGGTTCGGTACTGTGATGGGTCATCTTTCACCGGCGATGTGGAAAAAGTAGATCCTgtgagtc---catagtccattctttcttgattttacagtt---acaaattgtatgaggattagtgctgctccagtgttaagtttctctttgattttgttccatatggatag
|||||||||||||||| |  ||||||||| ||||||||||||| ||||| || || || ||||||||| |||| ||||| || |||    || | | ||       || |  ||| | |      ||| | | | || ||| ||     |    | | || | ||| | ||||    ||   ||       
ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGTTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCCAgtaagttttgcagaattcaaaggaattttaaattaaattccgaggaaaatat-taagcattggtaaattttatttttcaattgtctttctgatgagatttgttag------

upper sequence: LOC_Os02g47400.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA16G08240.1 (Glycine max), 5'ss of exon 5
ATTTCTACAATTGGAACAAGGTCAAGGTTCGGTACTGTGATGGGTCATCTTTCACCGGCGATGTGGAAAAAGTAGATCCTgtgagtc---catagtcca------ttctttcttgattttacagttacaaattgtatgaggattagtgctgctccagtg-ttaagtttctctttgattttgt-tccat-atggatag-----
|||||||||||||||| |  ||||||||| ||||||||||||| ||||| || || || ||||||||| |||| ||||| || |||    || | | ||      || |   || | ||   ||  | | |||   ||  | | | |  |  |       ||   |||||  |    ||||| |   | ||| |||      
ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGTTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCCAgtaagttttgcagaattcaaaggaattttaaattaagttccgaggaaaatattaagtgtaggtaaattttatttttccaattgtctttctgatgagatttgtatatgtgatgtataaatcag

upper sequence: LOC_Os02g47400.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA16G17150.1 (Glycine max), 5'ss of exon 5
ATTTCTACAATTGGAACAAGGTCAAGGTTCGGTACTGTGATGGGTCATCTTTCACCGGCGATGTGGAAAAAGTAGATCCTgtgagtc---catagtccattctttcttgattttacagttacaaattgtatg---aggattagtgc-tgctccagtgttaagtttctctttgat----tttgttccatatgg-atag---------
|||||||||||||||| |  ||||||||| ||||||||||||||||||| || || || ||||||||| |||| ||||  || |||    || | | ||       ||||  ||| ||||||||     ||    || ||| ||   |  |    |   || ||||| | | ||    |||||   || ||   ||          
ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttgcaaaattcaaaggaatttgaaatta-agttacaaggaaaatattaagcatttgtaaattttatttttccaattttctttctaatgagatttgtataatgtgatgtatatatatcag