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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATCGTTAATGATCCTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATGgtaagtcaacagcacttgagaactccttttgtgttttaacatgaacgtgctctttttttttttttttttgcggggcaacacgtgcttgaatgcacatgtg...

Basic information

species Oryza sativa
transcript LOC_Os02g47110.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47110.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G106795_T01 (Zea mays), 5'ss of exon 5
GCAATCGTTAATGATCCTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATGgtaagtcaacagcacttgagaactccttttgtgttttaacatgaacgtgctctttttttttttttttttgcggggcaacacgtgcttgaatgcacatgtg--
|||||  | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||||  ||||||   || | | | | | ||| |  |  || |                |   | |    |      |     ||  | |  ||  
GCAATAATCAATGATCCTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATGgtgaggcaacaatacttgacc-cttcatatatatattagctcggccgggagggggggagaccgcctcccg-gtattatattaagaaaagatcgaaacatggt

upper sequence: LOC_Os02g47110.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G113995_T01 (Zea mays), 5'ss of exon 5
GCAATCGTTAATGATCCTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATGgtaagtcaacagcacttgagaactccttttgtgttttaacatgaacgtgc-tctttttttttttttttttgcggggcaac-acgtgcttgaatgcacatgtg
|||||  | || ||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| || ||||  |||||||   || ||     |      | ||||  ||  |  ||  |      |     |   |     | ||  ||  ||  |  ||  
GCAATAATCAAAGATCCTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATGgtgagccaaccacacttgactccttctaacacgaagattcctgaaaatgaatagttactcaaccatgcaaacactgttttgatgtatttatatctagctg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10794629|gb|AU108595.1|AU108595
EST:     TTTGATGCTTAACAGTGTAATATTGGTATTTGCCCAATAAACAAGATATG                         AAAGGGNCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGAT
genomic: TTTGATGCTTAACAGTGTAATATTGGTATTTG-CCAATAAACAAGATATGgtaagtcaac ... gttttgtcagAAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGAT
EST: gi|8527517|gb|AU092332.1|AU092332
EST:     CTTTGATGCTTNACAGTGTAATATTGGTATTTGCCAATAAACAAGATATG                         AAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGAT
genomic: CTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATGgtaagtcaac ... gttttgtcagAAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGAT
EST: gi|66919065|gb|CX105913.1|CX105913
EST:     CTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATG                         AAAGGGGCGATGACGCCGTTGGAAGTGTGCGA
genomic: CTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATGgtaagtcaac ... gttttgtcagAAAGGGGCAATGACGCCGTTGGAGGTGTGCGA
EST: gi|33692402|gb|CF320641.1|CF320641
EST:     CTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATG                         AAAGGGGCAATGACGCCGTTG
genomic: CTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATGgtaagtcaac ... gttttgtcagAAAGGGGCAATGACGCCGTTG