1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAAGGATGACGTCGCCGGCGAGGTCCCGGTCGCGTTCGTGGTCCGCGCCGCCGACTCCGACATCACGGAGGAGTCCATCAAGGAATTCATATCCAAGCAGgtattgattgggatgagattgacgacgcaacagcagcaaaattgctggagacctcacgtacgagagcttgtcgtttcgcgtttctctgcag
species | Oryza sativa |
transcript | LOC_Os02g46970.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCGACTCCGACATCACGGAGGAGTCCATCAAGGAATTCATATCCAAGCAG GTGGTGTTCTACAAGAGGCTACACAAGGTGCACTTCATCCATGCGATCCCCEST: gi|89198357|gb|CI007417.1|CI007417
genomic: CCGACTCCGACATCACGGAGGAGTCCATCAAGGAATTCATATCCAAGCAGgtattgattg ... ttctctgcagGTGGTGTTCTACAAGAGGCTACACAAGGTGCACTTCATCCATGCGATCCCC
EST: CCGACTCCGACATCACGGAGGAGTCCATCAAGGAATTCATATCCAAGCAG GTGGTGTTCTACAAGAGGCTACACAAGGTGCACTTCATCCATGCGATCCCCEST: gi|86497134|gb|CI139767.1|CI139767
genomic: CCGACTCCGACATCACGGAGGAGTCCATCAAGGAATTCATATCCAAGCAGgtattgattg ... ttctctgcagGTGGTGTTCTACAAGAGGCTACACAAGGTGCACTTCATCCATGCGATCCCC
EST: CGACTCCGACATCACGGAGGAGTCCATCCAAGGAATTCATATCCAAGCAG GTGGTGTTCTACAAGAGGCTACACCAAGGTGCACTTCATCCATGCGATCCCEST: gi|89182463|gb|CI113832.1|CI113832
genomic: CGACTCCGACATCACGGAGGAGTCCATC-AAGGAATTCATATCCAAGCAGgtattgattg ... ttctctgcagGTGGTGTTCTACAAGAGGCTACAC-AAGGTGCACTTCATCCATGCGATCCC
EST: CCGACTCCGACATCACGGAGGAGTCCATCAAGGAATTCATATCCAAGCAG GTGGTGTTCTACAAGAGGCTACACAAGGTGCACTTCATCCATGCGATCCCC
genomic: CCGACTCCGACATCACGGAGGAGTCCATCAAGGAATTCATATCCAAGCAGgtattgattg ... ttctctgcagGTGGTGTTCTACAAGAGGCTACACAAGGTGCACTTCATCCATGCGATCCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGATGACGTCGCCGGCGAGGTCCCGGTCGCGTTCGTGGTCCGCGCCGCCGACTCCGACATCACGGAGGAGTCCATCAAGGAATTCATATCCAAGCAGgtattgattgggatgagattgacgacgcaacagcagcaaaattgctggagacctcacgtacgagagcttgtcgtttcgcgtttctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA