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CCTTCAGATAAGCCTGTTCCGAATGCCACTCTACAAGTTACTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAGgtgcctgttccaaatgccacctccaagtttcatctgtatttggacatattatgcattgctagctagctagcatttctaataatcccagctcagcatagat...
species | Oryza sativa |
transcript | LOC_Os02g46510.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAG GTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAGEST: gi|11565235|gb|AU165871.1|AU165871
genomic: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAGgtgcctgttc ... ctcttgaaagGTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAG
EST: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAG GTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAGEST: gi|11565221|gb|AU165857.1|AU165857
genomic: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAGgtgcctgttc ... ctcttgaaagGTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAG
EST: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGANGAACGAG GTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAGEST: gi|11565225|gb|AU165861.1|AU165861
genomic: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAGgtgcctgttc ... ctcttgaaagGTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAG
EST: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAG GTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAGEST: gi|58672424|gb|CK061110.1|CK061110
genomic: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAGgtgcctgttc ... ctcttgaaagGTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAG
EST: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAG GTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAGEST: gi|11025706|gb|AU162307.1|AU162307
genomic: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAGgtgcctgttc ... ctcttgaaagGTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAG
EST: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAG GTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAGEST: gi|58679139|gb|CK067826.1|CK067826
genomic: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAGgtgcctgttc ... ctcttgaaagGTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAG
EST: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAG GTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAGEST: gi|428998|gb|D25154.1|D25154
genomic: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAGgtgcctgttc ... ctcttgaaagGTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAG
EST: CTGGTGCTGTTGGTTGGNGAAGAGAGGGTCTTATGTACAAGAAGAACGAG GTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAGEST: gi|58684077|gb|CK072764.1|CK072764
genomic: CTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAGgtgcctgttc ... ctcttgaaagGTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAG
EST: GGGTCTTATGTACAAGAAGAACGAG G-TTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAG
genomic: GGGTCTTATGTACAAGAAGAACGAGgtgcctgttc ... ctcttgaaagGTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTCAGATAAGCCTGTTCCGAATGCCACTCTACAAGTTACTGGTGCTGTTGGTTGGAGAAGAGAGGGTCTTATGTACAAGAAGAACGAGgtgcctgttccaaatgccacctccaagtttcatctgtatttggacatattatgcattgctagctagctagcatttctaataatcccagctcagcatagat
- - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacctc