1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtgatctttgcatatggtatgccaattcattctttctggttttgtgttgtaattgttatgatttggtgttattccag
species | Oryza sativa |
transcript | LOC_Os02g44510.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG TGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGAEST: gi|58609426|gb|CK037459.1|CK037459
genomic: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtga ... gttattccagTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGA
EST: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG TGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGAEST: gi|38483289|gb|CF967091.1|CF967091
genomic: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtga ... gttattccagTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGA
EST: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG TGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGAEST: gi|88401279|gb|CI685275.1|CI685275
genomic: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtga ... gttattccagTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGA
EST: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG TGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGAEST: gi|58594812|gb|CF993120.1|CF993120
genomic: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtga ... gttattccagTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGA
EST: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG TGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGAEST: gi|58678387|gb|CK067074.1|CK067074
genomic: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtga ... gttattccagTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGA
EST: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG TGCTCTTTATGTTGTTGATTTGGEST: gi|218480649|gb|FG956875.1|FG956875
genomic: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtga ... gttattccagTGCTCTTTATGTTGTTGATTTGG
EST: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG TGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGAEST: gi|58692422|gb|CK081109.1|CK081109
genomic: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtga ... gttattccagTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGA
EST: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG TGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGAEST: gi|88321783|gb|CI672927.1|CI672927
genomic: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtga ... gttattccagTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGA
EST: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG TGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGAEST: gi|58687397|gb|CK076084.1|CK076084
genomic: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtga ... gttattccagTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGA
EST: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG TGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGAEST: gi|428777|gb|D24933.1|D24933
genomic: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtga ... gttattccagTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGA
EST: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG TGCTCTTTATGTTGTTGATTTGGNCAAATTTEST: gi|58658473|gb|CK047153.1|CK047153
genomic: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtga ... gttattccagTGCTCTTTATGTTGTTGATTTGGCCAAATTT
EST: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG TGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGAEST: gi|88371879|gb|CI681390.1|CI681390
genomic: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtga ... gttattccagTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGA
EST: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG TGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGAEST: gi|27545628|gb|CA767112.2|CA767112
genomic: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtga ... gttattccagTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGA
EST: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG TGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGA
genomic: GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtga ... gttattccagTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGgtgggtgtgatctttgcatatggtatgccaattcattctttctggttttgtgttgtaattgttatgatttggtgttattccag
- - - - - AGATCA
- - - - - - - - - - - - GGAAGA