Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAGAGATGCTGCGACTGGCCGCGGTGTTATGTATGCTACTGAGGCTTTATTGACTGAATACAGCGAGTCAATTTCAGGATCAACCTTTGTTATCCAGgtaacaatgacaacattattgattgacttaacaatatgttaatattaggatgccaaaaattgtataactttgtacttgatcaactactaatcttttctgcag

Basic information

species Oryza sativa
transcript LOC_Os02g43470.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8856689|gb|AU094007.1|AU094007
EST:     CCTTTGTTATCCAG                         GTTTTGGGGAATGTTGGTTCTTGGGCAGCCAAAGCTCATCCATCAGAAAGT
genomic: CCTTTGTTATCCAGgtaacaatga ... ttttctgcagGGTTTGGGGAATGTTGGTTCTTGGGCAGCC-AAGCTCATCCATCAGAAAGG
EST: gi|29613175|gb|CB618188.1|CB618188
EST:     TATTGACTGAATACAGCGAGTCAATTTCAGGATCAACCTTTGTTATCCAG                         GGTTTGGGGAATGTTGGTTCTTGGGCAGCCAAGCTCATCCATCAGAAAGGT
genomic: TATTGACTGAATACAGCGAGTCAATTTCAGGATCAACCTTTGTTATCCAGgtaacaatga ... ttttctgcagGGTTTGGGGAATGTTGGTTCTTGGGCAGCCAAGCTCATCCATCAGAAAGGT