1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGTTGACACATGGGTCGCTGCTGCTGGCAAAAATGGCATGCGTCGAGACTGGCATGTTCGTGACTACAACTCTGGCCGAACAATCTTGAGAGCTACAAGgtttgggcttcaactgtattctattgcaagaatcatctgtatcattttttttgtgaggacatccaatcttggtatttctgcttggtcacatcattgataatcactaattgtgctccttttccaatccatttgttgcag
species | Oryza sativa |
transcript | LOC_Os02g43090.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGCATGTTCGTGACTACAACTCTGGCCGAACAATCTTGAGAGCTACAAG TGTTTGGGTGATGATGCACAAGAAAACTAGAAGACTTTCAAAAATGCCAGAEST: gi|29643342|gb|CB648349.1|CB648349
genomic: TGGCATGTTCGTGACTACAACTCTGGCCGAACAATCTTGAGAGCTACAAGgtttgggctt ... tttgttgcagTGTTTGGGTGATGATGCACAAGAAAACTAGAAGACTTTCAAAAATGCCAGA
EST: TGGCATGTTCGTGACTACAACTCTGGCCGAACAATCTTGAGAGCTACAAG TGTTTGGGTGATGATGCACAAGAAAACTAGAAGACTTTCAAAAATGCCAGA
genomic: TGGCATGTTCGTGACTACAACTCTGGCCGAACAATCTTGAGAGCTACAAGgtttgggctt ... tttgttgcagTGTTTGGGTGATGATGCACAAGAAAACTAGAAGACTTTCAAAAATGCCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTTGACACATGGGTCGCTGCTGCTGGCAAAAATGGCATGCGTCGAGACTGGCATGTTCGTGACTACAACTCTGGCCGAACAATCTTGAGAGCTACAAGgtttgggcttcaactgtattctattgcaagaatcatctgtatcattttttttgtgaggacatccaatcttggtatttctgcttggtcacatcattgataatcactaattgtgctccttttccaatccatttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT