1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AATGCGTGGAGCCCAGCATGGACACTACAATCCGTTTGTAGAGCCATAATTGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccaccttcctactaattctgccacatatagttcagccattattttgtaatgtgaaagtaatagatgttcatgctctcactgaatcaagctatgg...
species | Oryza sativa |
transcript | LOC_Os02g42314.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGAGTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88988696|gb|CI039115.1|CI039115
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|86872694|gb|CI341904.1|CI341904
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|300216021|gb|HO088647.1|HO088647
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88280311|gb|CI401509.1|CI401509
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|86905439|gb|CI285402.1|CI285402
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTEST: gi|86881474|gb|CI322565.1|CI322565
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCT
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88384445|gb|CI553937.1|CI553937
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88243713|gb|CI242835.1|CI242835
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88485512|gb|CI422783.1|CI422783
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|33655539|gb|CF278153.1|CF278153
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88550505|gb|CI478483.1|CI478483
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAGCCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|33655538|gb|CF278152.1|CF278152
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|9865086|gb|AU100836.1|AU100836
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|33807112|gb|CF329438.1|CF329438
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88506894|gb|CI434400.1|CI434400
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|87006784|gb|CI285818.1|CI285818
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCAEST: gi|186892747|gb|FG124648.1|FG124648
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCA
EST: TGCATTGATGGCCCATCCAGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88967252|gb|CI002446.1|CI002446
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|86415895|gb|CI029906.1|CI029906
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: ACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|89194948|gb|CI003412.1|CI003412
genomic: ACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88320430|gb|CI523173.1|CI523173
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88244898|gb|CI242749.1|CI242749
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|55409211|gb|CV721587.1|CV721587
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88258774|gb|CI361360.1|CI361360
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88564069|gb|CI494786.1|CI494786
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88270691|gb|CI385949.1|CI385949
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88564099|gb|CI494816.1|CI494816
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88506428|gb|CI433934.1|CI433934
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTNACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88459493|gb|CI519554.1|CI519554
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|25806709|gb|CA762670.1|CA762670
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCGAGAAEST: gi|88460200|gb|CI529275.1|CI529275
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|86527972|gb|CI168178.1|CI168178
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|86837261|gb|CI347731.1|CI347731
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88280941|gb|CI401991.1|CI401991
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG CCAACCTCCTGCGCTCAG-CNGACATCAGAGGCTATCAATCCATGGCAAGAEST: gi|86260810|gb|CI000258.1|CI000258
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGC-GACATCAGAGGCTATCAATCCATGGCAAGA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88253294|gb|CI351920.1|CI351920
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|88849807|gb|CI001513.1|CI001513
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAAEST: gi|33689647|gb|CF317886.1|CF317886
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
EST: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAG GCAACCTCCTGCGCTCAGGCGACATCGGAGGCTATCAATCCATGGCAAGAA
genomic: TGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccac ... gtaaatatagGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGCGTGGAGCCCAGCATGGACACTACAATCCGTTTGTAGAGCCATAATTGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGgtagctccaccttcctactaattctgccacatatagttcagccattattttgtaatgtgaaagtaatagatgttcatgctctcactgaatcaagctatgg
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