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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGCTGAAGTGCATTCGCATATTCAAGATCATGGTGGTTCCTTAGTTGGGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaatcatcatatttgatagacaagtgctgaaaaatttaatgcgatattttcatctttgtagttttttttatcaggaaagcaaacatcccatga...

Basic information

species Oryza sativa
transcript LOC_Os02g41550.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86486568|gb|CI129201.1|CI129201
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|88849343|gb|CI087865.1|CI087865
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|86487772|gb|CI130405.1|CI130405
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|86875165|gb|CI322337.1|CI322337
EST:     GGCCTTCAAGATATCTCCTGCAGGAACCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCCCAGATGGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|86882138|gb|CI325669.1|CI325669
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|29628238|gb|CB633249.1|CB633249
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTGTGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|29674881|gb|CB671156.1|CB671156
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|29681036|gb|CB677311.1|CB677311
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|38469471|gb|CF953602.1|CF953602
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTGTGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACA
EST: gi|88829194|gb|CI074064.1|CI074064
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|86494226|gb|CI136859.1|CI136859
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|88836109|gb|CI371214.1|CI371214
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         CTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|88247489|gb|CI247338.1|CI247338
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|89165883|gb|CI102973.1|CI102973
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|88263088|gb|CI366862.1|CI366862
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|86903242|gb|CI313605.1|CI313605
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|86434633|gb|CI105866.1|CI105866
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|88272967|gb|CI388423.1|CI388423
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|29627389|gb|CB632400.1|CB632400
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTGTGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|88443109|gb|CI546681.1|CI546681
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|86887182|gb|CI325997.1|CI325997
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|38475358|gb|CF959491.1|CF959491
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTGTGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|33681244|gb|CF309483.1|CF309483
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|86412569|gb|CI066974.1|CI066974
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|86889411|gb|CI317211.1|CI317211
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|86886032|gb|CI319880.1|CI319880
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCCCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|86487196|gb|CI129829.1|CI129829
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|29641885|gb|CB646892.1|CB646892
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|29674938|gb|CB671213.1|CB671213
EST:     GGCCTTCAAGATATTTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTTTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|29631588|gb|CB636597.1|CB636597
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|89161849|gb|CI102197.1|CI102197
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|21236663|gb|AJ309291.1|AJ309291
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTGTGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|86841995|gb|CI338390.1|CI338390
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|88960793|gb|CI382474.1|CI382474
EST:     GGCCTTCAAGATATCTCCTGCAGGAACCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCCCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|88450487|gb|CI546987.1|CI546987
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|88449533|gb|CI538890.1|CI538890
EST:     GCCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|88251616|gb|CI350044.1|CI350044
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCCCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|88990861|gb|CI108248.1|CI108248
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|88269222|gb|CI380520.1|CI380520
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|86494900|gb|CI137533.1|CI137533
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|29624646|gb|CB629657.1|CB629657
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTGTGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|88842288|gb|CI081544.1|CI081544
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|29675696|gb|CB671971.1|CB671971
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA
EST: gi|86871128|gb|CI328330.1|CI328330
EST:     GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAG                         GTAGAAGATAGCTCTACCGCAGATAGTGGTTCGACCATTTCAAGACAACGA
genomic: GGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaa ... cactttgcagGTAGAAGATAGCTCTACCGCAGATAGTGGTTCGAGCATTTCAAGACAACGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCAGCTGAAGTGCATTCGCATATTCAAGATCATGGTGGTTCCTTAGTTGGGCCTTCAAGATATCTCCTGCAGGAAGCAGGTAGAAACTATGTTGATGAGgtaagcttaatcatcatatttgatagacaagtgctgaaaaatttaatgcgatattttcatctttgtagttttttttatcaggaaagcaaacatcccatga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG