1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTTGAGCATCAAGACTGGACTATGAGTCAAGCTTGTACTGATTCATATACCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgttctctctatgttgacccgcataatcagcatatacatggtgttactataatctcttcaacattattattttagtgaaattagaatgtttac...
species | Oryza sativa |
transcript | LOC_Os02g40890.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|88504138|gb|CI431644.1|CI431644
genomic: CAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|86600278|gb|CI356035.1|CI356035
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|88262804|gb|CI364382.1|CI364382
genomic: CATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: AAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|396941616|gb|HO188273.1|HO188273
genomic: AAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|88848293|gb|CI086815.1|CI086815
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|86432844|gb|CI086455.1|CI086455
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|86414401|gb|CI068804.1|CI068804
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|86880405|gb|CI320946.1|CI320946
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGC-TGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTANTEST: gi|396941507|gb|HO188716.1|HO188716
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|88277826|gb|CI398628.1|CI398628
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: GCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|87028768|gb|CI349487.1|CI349487
genomic: GCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|33657910|gb|CF280524.1|CF280524
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|33807484|gb|CF329619.1|CF329619
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CAAAACTCTGAAGAAATGGCATGGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAAAAATT-ATGGAGGTCATTAGTEST: gi|88280229|gb|CI401427.1|CI401427
genomic: CAAAACTCTGAAGAAATGGCATGG-TTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: TTGGCTTGCCAGTTCTAGTTTTACA CTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|9865530|gb|AU101280.1|AU101280
genomic: TTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|88507701|gb|CI435207.1|CI435207
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: GGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|33807485|gb|CF329620.1|CF329620
genomic: GGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: GAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAAAAATTTATGGAGGTCATTAGTEST: gi|86882400|gb|CI325805.1|CI325805
genomic: GAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|157650062|gb|EX449696.1|EX449696
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: GTTGGCTTGCCAATTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|163918588|gb|EG711638.1|EG711638
genomic: GTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|58696097|gb|CK084784.1|CK084784
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATCAGTEST: gi|88508201|gb|CI435707.1|CI435707
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|88236949|gb|CI236798.1|CI236798
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|66914261|gb|CX101109.1|CX101109
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|88491720|gb|CI428992.1|CI428992
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACA GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
genomic: CCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgt ... aaattggcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGAGCATCAAGACTGGACTATGAGTCAAGCTTGTACTGATTCATATACCAAAACTCTGAAGAAATGGCATGGTTGGCTTGCCAGTTCTAGTTTTACAgttgagtcgttctctctatgttgacccgcataatcagcatatacatggtgttactataatctcttcaacattattattttagtgaaattagaatgtttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA