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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAGGTGGTGTTGATAGAAGTGATTTGAAGACTCTTATCATCAATCAACCTGATGGCCCCAGTTTTCGTGTTAACGGTTACTTTGTGGAATGGCAGAAGgttaactggttatcttctgtttcttgtttcaattgttgagcacttgagctactattagataaaactgactcaaaaaatctcacctgttatttctattgaacag

Basic information

species Oryza sativa
transcript LOC_Os02g38010.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g38010.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 5
ACGAGGTGGTGTTGATAGAAGTGATTTGAAGACTCTTATCATCAATCAACCTGATGGCCCCAGTTTTCGTGTTAACGGTTACTTTGTGGAATGGCAGAAGgttaactggttatcttctgtttcttgtttcaattgttgagcacttgagctactattagataaaactgactcaaaaa--atctcacctgttatttctattgaacag
||| || ||||||||| |||||||| ||||  |  |    |||| ||||||||| || || || ||||||||||| || |||||||| ||||||||||||||     | ||| |||   ||       |   ||  ||   | |  |  | | |   | || |  || || |  |   || |    | ||||| ||  |   |||
ACGTGGAGGTGTTGATCGAAGTGATGTGAAACCCTTGCAAATCATTCAACCTGAAGGACCTAGCTTTCGTGTTAATGGGTACTTTGTTGAATGGCAGAAGgt-----gattaccttt--ttgggaaagtaggttactggaaaatctaagttcaacctgctata--tggcttatcatctatttttatttttattcctcattggcag