Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTGgtaagaactgatttgcattcaatttcttactgccatgtaaggttctctgcctggtatttgattactcagtgcacctgtgttccatgtctatctggctgca...

Basic information

species Oryza sativa
transcript LOC_Os02g35590.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163920379|gb|EG714466.1|EG714466
EST:     CAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTG                         AGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAA
genomic: CAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTGgtaagaactg ... ttctttgcagAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAA
EST: gi|88251938|gb|CI350366.1|CI350366
EST:     CAACCTGTTCACAATCTTACCGTACTG                         A-GTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAA
genomic: CAACCTCTTCACAATCTTACCGTACTGgtaagaactg ... ttctttgcagAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAA
EST: gi|163927722|gb|EG712482.1|EG712482
EST:     ATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTG                         AGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAA
genomic: ATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTGgtaagaactg ... ttctttgcagAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAA