1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTGCATGATGCTATTGGATATACAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaactccatgtagttgaactgttgaagaagagcatatgtgtgcttatatcatttactcaagcagtagtttgtattaaatatatacatttaaat...
species | Oryza sativa |
transcript | LOC_Os02g35130.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|88535512|gb|CI464316.1|CI464316
genomic: CAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: ACAGCTTGCAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|88484430|gb|CI421701.1|CI421701
genomic: ACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: CGGGATGAACAGCTTGCANACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|88503264|gb|CI430770.1|CI430770
genomic: CGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: AAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|88366308|gb|CI551140.1|CI551140
genomic: AAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: AGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|33684042|gb|CF312281.1|CF312281
genomic: AGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: GGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATNTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|86893473|gb|CI313495.1|CI313495
genomic: GGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACAT-TACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: AGGAGATCCAGAGAACTCGGGATGAACAGCTTCCAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|33683950|gb|CF312189.1|CF312189
genomic: AGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: AGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATG G-GGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|88283138|gb|CI404584.1|CI404584
genomic: AGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: GAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|88275782|gb|CI396386.1|CI396386
genomic: GAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: AGCTTGCAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|9864918|gb|AU100668.1|AU100668
genomic: AGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: AGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|88408289|gb|CI551418.1|CI551418
genomic: AGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: AGAACTCGGGATGAACAGCTTGCAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|33684158|gb|CF312397.1|CF312397
genomic: AGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: CTCGGGATGAACAGCTTGCAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|88456420|gb|CI561023.1|CI561023
genomic: CTCGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: GGATGAACAGCTTGCAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|29678307|gb|CB674582.1|CB674582
genomic: GGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: AGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|88289325|gb|CI553301.1|CI553301
genomic: AGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: GAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|33683949|gb|CF312188.1|CF312188
genomic: GAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: AGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|86873899|gb|CI334431.1|CI334431
genomic: AGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: AGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATGEST: gi|88533777|gb|CI460441.1|CI460441
genomic: AGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
EST: AGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATG GTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
genomic: AGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaa ... atgttcatagGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAACAGCAACTCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGCATGATGCTATTGGATATACAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGgtaagtgcaactccatgtagttgaactgttgaagaagagcatatgtgtgcttatatcatttactcaagcagtagtttgtattaaatatatacatttaaat
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC