1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCTGTGGATAACTATCATGTGTGCAAGTACCCAGAATGTGCTCGAAGGTTTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAGgtaagatctaattatacctccagatttgtgcttaggaaggaaccagttctgaccacttactttcataacactgatatag
species | Oryza sativa |
transcript | LOC_Os02g34680.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAG GGTGATCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCAEST: gi|29672568|gb|CB668843.1|CB668843
genomic: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAGgtaagatcta ... actgatatagGGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCA
EST: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCACCAGCATGAAAAG GGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCAEST: gi|66914493|gb|CX101341.1|CX101341
genomic: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAGgtaagatcta ... actgatatagGGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCA
EST: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAG GGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCAEST: gi|29636590|gb|CB641599.1|CB641599
genomic: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAGgtaagatcta ... actgatatagGGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCA
EST: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAG GGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCAEST: gi|4715724|gb|AU056840.1|AU056840
genomic: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAGgtaagatcta ... actgatatagGGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCA
EST: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAG GGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCAEST: gi|29659899|gb|CB656174.1|CB656174
genomic: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAGgtaagatcta ... actgatatagGGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCA
EST: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAG GGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCAEST: gi|29657487|gb|CB653762.1|CB653762
genomic: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAGgtaagatcta ... actgatatagGGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCA
EST: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAG GGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCAEST: gi|29659898|gb|CB656173.1|CB656173
genomic: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAGgtaagatcta ... actgatatagGGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCA
EST: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAG GGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCA
genomic: TTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAGgtaagatcta ... actgatatagGGTGGTCTCCAGAATCCAGGTGGGTCTGCAACAAACCGCAGTGGTCTAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGTGGATAACTATCATGTGTGCAAGTACCCAGAATGTGCTCGAAGGTTTACACAGGAATCAAAATTAAGGGCTCATATCAAGCAACAGCATGAAAAGgtaagatctaattatacctccagatttgtgcttaggaaggaaccagttctgaccacttactttcataacactgatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA