1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAATTACCTAGAATATATCAAGAGAGAGAAGAATGGTGCTCTTCAAGCTTTCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAGgtgctgtatctagctcaacttgttctggtatcatctggatgcacttcagtttcagtattgctaatgaatggcttatgcag
species | Oryza sativa |
transcript | LOC_Os02g33580.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAG GTTTTACGTCTGTCTGCAGCAACTCAGGATCTTCCTAAGTCTATTATTTGCEST: gi|29678870|gb|CB675145.1|CB675145
genomic: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAGgtgctgtatc ... gcttatgcagGTTTTACGTCTGTCTGCAGCAACTCAGGATCTTCCTAAGTCTATTATTTGC
EST: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAG GTTTTACGTCTGTCTGCAGCAACTCAGGATCTTCCTAAGTCTATTATTTGCEST: gi|29640793|gb|CB645800.1|CB645800
genomic: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAGgtgctgtatc ... gcttatgcagGTTTTACGTCTGTCTGCAGCAACTCAGGATCTTCCTAAGTCTATTATTTGC
EST: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAG GTTTTACGTCTGTCTGCAGCAACTCAGGATCTTCCTAAGTCTATTATTTGCEST: gi|25798230|gb|CA754191.1|CA754191
genomic: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAGgtgctgtatc ... gcttatgcagGTTTTACGTCTGTCTGCAGCAACTCAGGATCTTCCTAAGTCTATTATTTGC
EST: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAG GTTTTACGTCTGTCTGCAGCAACTCAGGATCTTCCTAAGTCTATTATTTGCEST: gi|116875217|gb|EC365725.1|EC365725
genomic: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAGgtgctgtatc ... gcttatgcagGTTTTACGTCTGTCTGCAGCAACTCAGGATCTTCCTAAGTCTATTATTTGC
EST: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAG GTTTTACGTCTGTCTGCAGCAACTCAGGATCTTCCTAAGTCTATTATTTGCEST: gi|11442630|gb|BF430533.1|BF430533
genomic: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAGgtgctgtatc ... gcttatgcagGTTTTACGTCTGTCTGCAGCAACTCAGGATCTTCCTAAGTCTATTATTTGC
EST: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAG GTTTTACGTCTGTCTGCAGCAACTCAGGATCTTCCTAAGTCTATTATTTGCEST: gi|218500847|gb|FG954980.1|FG954980
genomic: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAGgtgctgtatc ... gcttatgcagGTTTTACGTCTGTCTGCAGCAACTCAGGATCTTCCTAAGTCTATTATTTGC
EST: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAG GTTTTACGTCTGTCTGCAGCAACTCAGGATCTTCCTAAGTCTATTATTTGCEST: gi|29640227|gb|CB645236.1|CB645236
genomic: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAGgtgctgtatc ... gcttatgcagGTTTTACGTCTGTCTGCAGCAACTCAGGATCTTCCTAAGTCTATTATTTGC
EST: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAG GTTTTACGTCTGTCTG
genomic: TCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAGgtgctgtatc ... gcttatgcagGTTTTACGTCTGTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTACCTAGAATATATCAAGAGAGAGAAGAATGGTGCTCTTCAAGCTTTCCTGGTCAAACACATCAACAATTGGGTGACCAGAGCATACTGCGATAAGgtgctgtatctagctcaacttgttctggtatcatctggatgcacttcagtttcagtattgctaatgaatggcttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA