1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTGATTCTGCTGCACTGCGCCTTGCTGCTATAGCCTGGCATGATGAACTCGCCCCTTTGCCTAAGCCATTGCTAATCGTCAACATTGGAGGACCCACAAgtagatctccctatctttctcacgttgcacattccattgtttctgtatttggatacgtagtcctgctttgagtttgcaagaataaatctagccacaattc...
species | Oryza sativa |
transcript | LOC_Os02g33230.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGCCCCTTTGCCTAAGCCATTGCTAATCGTCAACATTGGAGGACCCACAA GGAATTGTAAGTATGGTGTCGACCTTGCCAGGCAGCTCATAGCTTCTACGTEST: gi|29660002|gb|CB656277.1|CB656277
genomic: CGCCCCTTTGCCTAAGCCATTGCTAATCGTCAACATTGGAGGACCCACAAgtagatctcc ... caatgattagGGAATTGTAAGTATGGTGTCGACCTTGCCAGGCAGCTCATAGCTTCTACGT
EST: CGCCCCTTTGCCTAAGCCATTGCTAATCGTCAACATTGGAGGACCCACAA GGAATTGTAAGTATGGTGTCGACCTTGCCAGGCAGCTCATAGCTTCTACGTEST: gi|218499017|gb|FG959227.1|FG959227
genomic: CGCCCCTTTGCCTAAGCCATTGCTAATCGTCAACATTGGAGGACCCACAAgtagatctcc ... caatgattagGGAATTGTAAGTATGGTGTCGACCTTGCCAGGCAGCTCATAGCTTCTACGT
EST: CGCCCCTTTGCCTAAGCCATTGCTAATCGTCAACATTGGAGGACC-ACAA GGAATGGTAAGTATGGTGTCGACCTTGCCAGGCAGCTCATAGCTTCTEST: gi|40486326|gb|BX897909.1|BX897909
genomic: CGCCCCTTTGCCTAAGCCATTGCTAATCGTCAACATTGGAGGACCCACAAgtagatctcc ... caatgattagGGAATTGTAAGTATGGTGTCGACCTTGCCAGGCAGCTCATAGCTTCT
EST: CGCCCCTTTGCCTAAGCCATTGCTAATCGTCAACATTGGAGGACCCACAA GGAATTGTAAGTATGGTGTCGAACTTGCCAGGCAGCTCATAGCTTCTACGTEST: gi|29677033|gb|CB673308.1|CB673308
genomic: CGCCCCTTTGCCTAAGCCATTGCTAATCGTCAACATTGGAGGACCCACAAgtagatctcc ... caatgattagGGAATTGTAAGTATGGTGTCGACCTTGCCAGGCAGCTCATAGCTTCTACGT
EST: TCAACATTGGAGGACCCACAA GGAATTGTAAGTATGGTGTCGACCTTGCCAGGCAGCTCATAGCTTCTACGT
genomic: TCAACATTGGAGGACCCACAAgtagatctcc ... caatgattagGGAATTGTAAGTATGGTGTCGACCTTGCCAGGCAGCTCATAGCTTCTACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGATTCTGCTGCACTGCGCCTTGCTGCTATAGCCTGGCATGATGAACTCGCCCCTTTGCCTAAGCCATTGCTAATCGTCAACATTGGAGGACCCACAAgtagatctccctatctttctcacgttgcacattccattgtttctgtatttggatacgtagtcctgctttgagtttgcaagaataaatctagccacaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaataaa