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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAATTCAGCTGATATTGTTAATAACTTCAAGTCATTGGCGAAGCAATATTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcatacttttctgtcttctaaatactatttatttaagtactcttcacatgatgtgatattaatagtaatatctcaaatgggctgatctgtatag...

Basic information

species Oryza sativa
transcript LOC_Os02g32610.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g32610.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G059671_T01 (Zea mays), 5'ss of exon 3
TACAATTCAGCTGATATTGTTAATAACTTCAAGTCATTGGCGAAGCAATATTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcatacttttctgtcttctaaatactattt-atttaagtactcttcacatgatgtgatattaatagtaatatctcaaatgggctgatctgtatag
 |  | |||||||||| |  | |||| |||||||  || || ||| |||||||||||||||| || ||| ||||| | ||||||| |||||||||||| |||        |  | ||||  | || || | |||   ||| |||  |||||     ||  ||| |||     || ||  |  |||    | |         
CATGACTCAGCTGATAATTCTGATAATTTCAAGTTGTTTGCCAAGAAATATTTCCTTGATTGTCAGTCGTTAAATCTCATGTTCAGTGATCCAGCAGCTGgt--------atctctctgcatgctgaacaatataagattcaagatctcttg----gaaatgacatttgatata-tacgttgaataattttag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58691963|gb|CK080650.1|CK080650
EST:     TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG                         T
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcag-
EST: gi|58691963|gb|CK080650.1|CK080650
EST:     TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG                         T
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcag-
EST: gi|58691963|gb|CK080650.1|CK080650
EST:     TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG                         T
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcag-
EST: gi|58691963|gb|CK080650.1|CK080650
EST:     TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG                         T
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcag-
EST: gi|58691963|gb|CK080650.1|CK080650
EST:     TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG                         T
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcag-
EST: gi|58691963|gb|CK080650.1|CK080650
EST:     TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG                         T
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcag-
EST: gi|29665412|gb|CB661687.1|CB661687
EST:     TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG                         GGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACT
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcagGGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACT
EST: gi|29664339|gb|CB660614.1|CB660614
EST:     TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG                         GGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACT
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcagGGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACT
EST: gi|29675289|gb|CB671564.1|CB671564
EST:     TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG                         GGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACT
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcagGGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACT
EST: gi|66922784|gb|CX109632.1|CX109632
EST:     TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG                         GGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACT
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcagGGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACT