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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTGTGTGTTGTTGGCTCTGTTGGTATAGTTTTGCATGCCCCAAAGGAGAGAGAGATTGATTCAATAGATGAAATATGGCATCTTGCTACTGAGCCAGgtaaactacttgaatacttctgtcaataaagaaccaacaggatccatttttatcttttcgtattaatataatatgtataccgtaggatacttttgtactg...

Basic information

species Oryza sativa
transcript LOC_Os02g29510.4
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g29510.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G092991_T01 (Zea mays), 5'ss of exon 5
ATCTTGTGTGTTGTTGGCTCTGTTGGTATAGTTTTGCATGCCCCAAAGGAGAGAGAGATTGATTCAATAGATGAAATATGGCATCTTGCTACTGAGCCAGgtaaactacttgaatacttctgtca----ataaagaaccaacaggatc-------catttttatcttttcgtattaatataatatgtataccgtaggatacttttgtactg--------------------
||  | ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| ||  | ||||||||||||||||| ||  |||||||||  |||  |||   |      ||    ||  |  || |  |  |         | ||||||| || |    ||  | |  | |      |     ||  || |||                        
ATACTATGTGTTGTTGGTTCTGTTGGTATAGTTTTGCATGCCCCAAAGGAGAGAAAAATTGATTCTATGAAGGAAATATGGCATCTTGCAACACAGCCAGgtag-ctaactgatctccatcaccatggaattcaatactagaaaaactttgctgacctttttattttctgcgtttgttctggtttactggactctctatgtttatgtgtacacaccatttctgacttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29670491|gb|CB666766.1|CB666766
EST:     GAGAGAGATTGATTCAATAGATGAAATATGGCATCTTGCTACTGAGCCAG                         GTTTTATTGTTTATTCATGTGTGGCTGTGGTGTCTGTTCTATTTTTGATTT
genomic: GAGAGAGATTGATTCAATAGATGAAATATGGCATCTTGCTACTGAGCCAGgtaaactact ... acttctgcagGTTTTATTGTTTATTCATGTGTGGCTGTGGTGTCTGTTCTATTTTTGATTT
EST: gi|29681128|gb|CB677403.1|CB677403
EST:     GAGAGAGATTGATTCAATAGATGAAATATGGCATCTTGCTACTGAGCCAG                         GTTTTATTGTTTATTCATGTGTGGCTGTGGTGTCTGTTCTATTTTTGATTT
genomic: GAGAGAGATTGATTCAATAGATGAAATATGGCATCTTGCTACTGAGCCAGgtaaactact ... acttctgcagGTTTTATTGTTTATTCATGTGTGGCTGTGGTGTCTGTTCTATTTTTGATTT