Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTATGAGAGTGCTTGCGAAACACTTTACGATGGATTCAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACGgtatcctttctgtctatttcggccacactacggctctctgtttgaaacagattatttggtggattaatgctgtggattatctacttcactgttgggatta...

Basic information

species Oryza sativa
transcript LOC_Os02g29150.2
intron # 5
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29663342|gb|CB659617.1|CB659617
EST:     GATGGATTCAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACG                         GGAAGCTCTGGCGTCCTTGAAGGCATCTGCAAGCACGGAGGCTAGGTGAAC
genomic: GATGGATTCAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACGgtatcctttc ... aaacatgcagGGAAGCTCTGGCGTCCTTGAAGGCATCTGCAAGCACGGAGGCTAGGTGAAC
EST: gi|88903581|gb|CI089119.1|CI089119
EST:     GATGGATTCAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACG                         GGAAGCTCTGGCGTCCTTGAAGGCATCTGCAAGCACGGAGGCTAGGTGAAC
genomic: GATGGATTCAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACGgtatcctttc ... aaacatgcagGGAAGCTCTGGCGTCCTTGAAGGCATCTGCAAGCACGGAGGCTAGGTGAAC
EST: gi|88419997|gb|CI516446.1|CI516446
EST:     GATGGATTCAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACG                         GGAAGCTCTGGCGTCCTTGAAGGCATCTGCAAGCACGGAGGCTAGGTGAAC
genomic: GATGGATTCAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACGgtatcctttc ... aaacatgcagGGAAGCTCTGGCGTCCTTGAAGGCATCTGCAAGCACGGAGGCTAGGTGAAC
EST: gi|88955433|gb|CI091525.1|CI091525
EST:     GATGGATTCAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACG                         GGAAGCTCTGGCGTCCTTGAAGGCATCTGCAAGCACGGAGGCTAGGTGAAC
genomic: GATGGATTCAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACGgtatcctttc ... aaacatgcagGGAAGCTCTGGCGTCCTTGAAGGCATCTGCAAGCACGGAGGCTAGGTGAAC
EST: gi|86497040|gb|CI139673.1|CI139673
EST:     GATGGATTCAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACG                         GGAAGCTCTGGCGTCCTTGAAGGCATCTGCAAGCACGGAGGCTAGGTGAAC
genomic: GATGGATTCAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACGgtatcctttc ... aaacatgcagGGAAGCTCTGGCGTCCTTGAAGGCATCTGCAAGCACGGAGGCTAGGTGAAC
EST: gi|8857531|gb|AU094849.1|AU094849
EST:     GATGGATTCAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACG                         GGAAGCTNTGGCGTCCTTGAAGGCATCTGCAAGCACGGAGGCTAGGTGAAC
genomic: GATGGATTCAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACGgtatcctttc ... aaacatgcagGGAAGCTCTGGCGTCCTTGAAGGCATCTGCAAGCACGGAGGCTAGGTGAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTATGAGAGTGCTTGCGAAACACTTTACGATGGATTCAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACGgtatcctttctgtctatttcggccacactacggctctctgtttgaaacagattatttggtggattaatgctgtggattatctacttcactgttgggatta

- - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG