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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTCATTATCCTGAGGAGAGGGAGCTTGAGCGCTGGGCACCGGATGAAGGGGATTCAGAGTGCATCGAATTGGAAAAATATGACAGAAAGGGGAACAGgtatggctacaaagttaagatttacaagtcacatcagtgaaagttggatttaaatcaaggtggttgtgaaataatcaatcacatttagagattgtttgat...

Basic information

species Oryza sativa
transcript LOC_Os02g27950.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g27950.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G056773_T01 (Zea mays), 5'ss of exon 5
GCTCTCATTATCCTGAGGAGAGGGAGCTTGAGCGCTGGGCACCGGATGAAGGGGATTCAGAGTGCATCGAATTGGAAAAATATGACAGAAAGGGGAACAGgtatggctacaaagttaagatttacaagtcacatcagtgaaagttggatttaaatcaaggtggttgtgaaataatcaatcacatttagagattgtttgat-----
|||||||||| | ||| |||||||| ||||||||||||||||| |||||||| ||||||||||| |||||| |||| || |||||||||||||| || ||||||    |   | | |||   || |||||   ||     |   |  |  |  |  ||             || ||| | | || ||  ||||||  | |     
GCTCTCATTACCTTGAAGAGAGGGAACTTGAGCGCTGGGCACCAGATGAAGGAGATTCAGAGTGTATCGAACTGGAGAAGTATGACAGAAAGGGAAATAGgtatt-tgatgtactgaagcaatataagtcttttcctctcatcctttaactgcaataac-caaccacct--tagtcattgaaatgtac-gattgtgagttaagca

upper sequence: LOC_Os02g27950.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM5G829738_T01 (Zea mays), 5'ss of exon 5
GCTCTCATTATCCTGAGGAGAGGGAGCTTGAGCGCTGGGCACCGGATGAAGGGGATTCAGAGTGCATCGAATTGGAAAAATATGACAGAAAGGGGAACAGgtatggctacaaagttaagatttacaagtcacatcagtgaaagttggatttaa--atcaaggtggttgtgaaataatcaatcacatttagagattgtttgat
||| ||||||||  || |||||||| ||||||||||||||||| |||| ||| ||||||||||| || ||| |||| || |||||| | ||||| || ||||||    |  |  | |||   || | ||    ||        ||   |  ||  | |||     ||   |  | | | || | || |  |   |  |  ||
GCTATCATTATCTCGAAGAGAGGGAACTTGAGCGCTGGGCACCAGATGGAGGAGATTCAGAGTGTATTGAACTGGAGAAGTATGACCGGAAGGGAAATAGgtatt-tgatgagctgaagcaatatacgttttttcttcttcctttaactgcaacaaccaaccaccttactaccttagccat-agatatgtaaggttgtgaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58695730|gb|CK084417.1|CK084417
EST:     GGGGATTCAGAGTGCATCGAATTGGAAAAATATGACAGAAAGGGGAACAG                         GAGCTGGGACCAGTTTGAAACAAATGCAGCTTTGTTTGGGGTAAAGAGTAC
genomic: GGGGATTCAGAGTGCATCGAATTGGAAAAATATGACAGAAAGGGGAACAGgtatggctac ... atggtgctagGAGCTGGGACCAGTTTGAAACAAATGCAGCTTTGTTTGGGGTAAAGAGTAC
EST: gi|58676503|gb|CK065190.1|CK065190
EST:     GGGGATTCAGAGTGCATCGAATTGGAAAAATATGACAGAAAGGGGAACAG                         GAGCTGGGACCAGTTTGAAACAAATGCAGCTTTGTTTGGGGTAAAGAGTAC
genomic: GGGGATTCAGAGTGCATCGAATTGGAAAAATATGACAGAAAGGGGAACAGgtatggctac ... atggtgctagGAGCTGGGACCAGTTTGAAACAAATGCAGCTTTGTTTGGGGTAAAGAGTAC