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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATATTTTCGATTCAGGTAACAGTAAAGGTACCATCATTGATAGTGGGACAACATTGGCGTATGTCCCAGAGGGGGTTTATAAGGCTCTATTTGCCATGgtacgaaatcctttctgaatcaatcctcttagttgagagtgatttgtgcacatcattatacattttcatgattattgttttgtag

Basic information

species Oryza sativa
transcript LOC_Os02g27360.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g27360.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G411333_T01 (Zea mays), 5'ss of exon 5
AAATATTTTCGATTCAGGTAACAGTAAAGGTACCATCATTGATAGTGGGACAACATTGGCGTATGTCCCAGAGGGGGTTTATAAGGCTCTATTTGCCATGgtacgaaatcctttct--gaatcaatcctcttagttgagagtgatttgtgcacatcattatacattttcatgattattgttttgtag
|| || ||| ||||| ||| |||||||||| || |||||||| |||||||||||| |||| ||| | ||   ||  ||||||| | || | || ||   |||| || ||  | | |  ||| ||||| |  ||||  |||   |||||| |    |||   |  ||||| |||  | | ||| |   
AAGTACTTTTGATTCTGGTGACAGTAAAGGCACTATCATTGACAGTGGGACAACACTGGCATATCTTCCGAGGGAAGTTTATAGGACTTTGTTGGCTGCGgtatgagattttctgtatgaaacaatctttgtagtgaagaacaatttgtacctgccatataatgttttcttgaccaat-tttag---

upper sequence: LOC_Os02g27360.2 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv05s0062g01370.t01 (Vitis vinifera), 5'ss of exon 5
AAATATTTTCGATTCAGGTAACAGTAAAGGTACCATCATTGATAGTGGGACAACATTGGCGTATGTCCCAGAGGGGGTTTATAAGGCTCTATTTGCCATGgtacgaaat---cctttctgaatcaat------cctcttagttgagagtgatttgtgcacatca-----ttatacattttcatgattattgttttgtag-----------
| || | || |||   ||  |||  ||||| || |||||||||||||| ||||| ||||| ||| ||||||||| ||||||| |     ||||    | |||| |  ||   |||  |   || |||          || |||  |  |  | | |  | ||       ||| | | ||| ||  |  || |||| |             
AGATGTATTTGATGTGGGAGACAAGAAAGGAACAATCATTGATAGTGGTACAACCTTGGCTTATCTCCCAGAGGTGGTTTATGATCAGTTATTGAGTAAGgtaggtgataaacctgcccatataaataaaaaataaatttgtttgggattctctttataaattgcgtacttacatagtttaatattcttttttttttcccctttttttag