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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGTTTGGAATTGCCTTTCAAAATTGAAAACATCAATACCGGATTATCCTCAAACTGAGACATGTGAGCTACTTATAGTTGATCGTTCAGTAGACCAGgtacattgtaaacatacctgtatacgcagttttgacatctatcctagtgctacattgagcatggtctatatatgctgctgcttcataatttctttggcaccatag

Basic information

species Oryza sativa
transcript LOC_Os02g25580.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g25580.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G052880_T01 (Zea mays), 5'ss of exon 9
TGCTGTTTGGAATTGCCTTTCAAAATTGAAAACATCAATACCGGATTATCCTCAAACTGAGACATGTGAGCTACTTATAGTTGATCGTTCAGTAGACCAGgtacattgtaaacatacctgtatacgcagttttgacatctatcctagtgctacattgagca--tggtctatatatgctgctgcttcataatttctttggcaccatag
   ||| |||||||| ||| | ||||  |||||  ||||||| || | ||||||||| || || ||||||||||||||||| || |||||| |||| |||||| ||  | ||||||  |||       | ||| ||   |||  |  | |||||||||| |  |||| |  || |  |  | |  | |  ||||||||| ||   ||
CAGTGTATGGAATTGTCTTGCGAAATATAAAACGACAATACCTGAATTTCCTCAAACAGAAACTTGTGAGCTACTTATAGTAGACCGTTCAATAGATCAGgtatatgttgaacatatatgt-------gatttaaccattatttttcttctacattgagtaaatggtgttaatctttttataccgctttgtttctttggtacttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58680727|gb|CK069414.1|CK069414
EST:     CTCAAACTGAGACATGTGAGCTACTTATAGTTGATCGTTCAGTAGACCAG                         ATTGCACCAATCATTCATGAATGGACATATGACGCGATGTGCCATGATCTT
genomic: CTCAAACTGAGACATGTGAGCTACTTATAGTTGATCGTTCAGTAGACCAGgtacattgta ... ggcaccatagATTGCACCAATCATTCATGAATGGACATATGACGCGATGTGCCATGATCTT
EST: gi|33676893|gb|CF305132.1|CF305132
EST:     CTCAAACTGAGACATGTGAGCTACTTATAGTTGATCGTTCAGTAGACCAG                         ATTGCACCAATCATTCATGAATGGACATATGACGCGATGTGCCATGATCT
genomic: CTCAAACTGAGACATGTGAGCTACTTATAGTTGATCGTTCAGTAGACCAGgtacattgta ... ggcaccatagATTGCACCAATCATTCATGAATGGACATATGACGCGATGTGCCATGATCT
EST: gi|58674876|gb|CK063563.1|CK063563
EST:     CTCAAACTGAGACATGTGAGCTACTTATAGTTGATCGTTCAGTAGACCAG                         ATTGCACCAATCATTCATGAATGGACATATGACGCGATGTGCCATGATCTT
genomic: CTCAAACTGAGACATGTGAGCTACTTATAGTTGATCGTTCAGTAGACCAGgtacattgta ... ggcaccatagATTGCACCAATCATTCATGAATGGACATATGACGCGATGTGCCATGATCTT