Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTTTGAGAAGAACTTTGCTGTTAAGTTCCCAGCTTGCTCAATTGCTGCCAAGTGCCACATTGATCAAAGCACAACAATTCTTGATGTGCAAGGGGTGgtatgtatgtgcaaatatttggataattcattaaatgattgcacttttactatttataatctaagaaaaaaaatacatttttag

Basic information

species Oryza sativa
transcript LOC_Os02g24430.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g24430.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G162461_T01 (Zea mays), 5'ss of exon 5
GGAGTTTGAGAAGAACTTTGCTGTTAAGTTCCCAGCTTGCTCAATTGCTGCCAAGTGCCACATTGATCAAAGCACAACAATTCTTGATGTGCAAGGGGTGgtatgtatgtgcaaatatttggataattcattaaatgattgcacttttactatttataatctaagaaaaaaaatacatttttag
|||||| |||||||||||||||||||||||||||||||||||||| || || |||  ||| ||||| || ||||||||||||||||| |||||||| |||||| |||| | |||||   | | |   | | | |||| | ||  ||||||  |  |||| |       ||| | ||||||| ||
GGAGTTCGAGAAGAACTTTGCTGTTAAGTTCCCAGCTTGCTCAATCGCCGCGAAGCACCATATTGACCAGAGCACAACAATTCTTGACGTGCAAGGAGTGgtaggtatctacaaat---ttggtggct-actcaatggt-gcgattttacagtgaataacc-------aaagacacattttcag

upper sequence: LOC_Os02g24430.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA06G01270.1 (Glycine max), 5'ss of exon 4
GGAGTTTGAGAAGAACTTTGCTGTTAAGTTCCCAGCTTGCTCAATTGCTGCCAAGTGCCACATTGATCAAAGCACAACAATTCTTGATGTGCAAGGGGTGgtatgtatgtgcaaatatttggataattcattaaatgattgcacttttactatttataatctaagaaaaaaaatacatttttag------------------
 |||||||| | || ||| ||||||||||| || || || || || || || |||   |||||||| ||||||||||| ||| | ||||| ||||| ||||||||||        ||     | | |||| |     | |   | | | | |   | || | ||      |||||  ||   ||                  
AGAGTTTGAAAGGACCTTCGCTGTTAAGTTGCCTGCATGTTCTATCGCGGCAAAGAAGCACATTGACCAAAGCACAACTATTTTGGATGTTCAAGGAGTGgtatgtacaaaattctacagctacatttcagttctccaatc--cctctgccaaagaaaaaccaattgttgaaatattttaaaagtaatctccaatccctcta

upper sequence: LOC_Os02g24430.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA11G07660.1 (Glycine max), 5'ss of exon 3
GGAGTTTGAGAAGAACTTTGCTGTTAAGTTCCCAGCTTGCTCAATTGCTGCCAAGTGCCACATTGATCAAAGCACAACAATTCTTGATGTGCAAGGGGTGgta---------------tgtatgtgcaaatatttgg---ataattcat-taaatgattgcactttt-actatttataatctaagaaaaaaaatacatttttag
||||||||||| ||  |||| |||||||||  ||||||| ||||||||||| |||   ||||| |||||||| ||||| || || || ||||| || ||||||               | ||||||| || |        |||||| ||  |||| |||| || ||| |  ||   | | || | ||  | || |  |      
GGAGTTTGAGAGGACATTTGATGTTAAGTTTGCAGCTTGTTCAATTGCTGCAAAGAAGCACATAGATCAAAGTACAACTATCCTGGACGTGCAGGGAGTGgtaagaaaaatagttaattatatgtgccaagaacgaagtcataatttatacaaataattgtacatttgaacatggcttagcttaaaatgacaaaatgtac----

upper sequence: LOC_Os02g24430.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA11G12270.1 (Glycine max), 5'ss of exon 3
GGAGTTTGAGAAGAACTTTGCTGTTAAGTTCCCAGCTTGCTCAATTGCTGCCAAGTGCCACATTGATCAAAGCACAACAATTCTTGATGTGCAAGGGGTGgtatgtatg------tgcaa--atatt--tggataattcat---taaatgattgcactt-ttactatttataatc--taagaaaaaaaatacatttttag
 |||||||||||||  || | |||||||||||| || || |||||  | || |||   |||||||| ||||||||||| ||  | ||||||||||| ||||||||||||      |||||   || |  |  ||| ||  |   |   | |   | ||| || | |  |  || |   ||||  |||| |||  || || 
AGAGTTTGAGAAGACATTCGTTGTTAAGTTCCCTGCCTGTTCAATCTCAGCAAAGAAGCACATTGACCAAAGCACAACTATCTTGGATGTGCAAGGAGTGgtatgtatgaaattatgcaacagtactactaaatagtttttacttttctaacccctcttcttcccaaatcaaaccagcaagagtaaaagtactattataa

upper sequence: LOC_Os02g24430.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA02G05980.1 (Glycine max), 5'ss of exon 3
GGAGTTTGAGAAGAACTTTGCTGTTAAGTTCCCAGCTTGCTCAATTGCTGCCAAGTGCCACATTGATCAAAGCACAACAATTCTTGATGTGCAAGGGGTGgtatgtatgtgcaaatatttggataattcattaaatgattgcacttttactatttataatctaagaaaaaaaat-acatttttag------------------
|||||| |||| ||  || | ||| || ||  | |||||||| ||| |||| |||   ||||| |||||||| ||||| || |||||||||||||| |||||| ||||    ||||| || | | ||   ||||   |   || | ||    || | ||   || ||| || ||    || ||                    
GGAGTTCGAGAGGACATTCGATGTGAAATTTGCGGCTTGCTCCATTTCTGCAAAGAAACACATCGATCAAAGTACAACCATCCTTGATGTGCAAGGAGTGgtacgtat-cagaaatagtttgtttatc--ttaagccaacccaatattgaagttaaaaaataaaaaaacaacattgtgttcttgcaccaaagatcttaccatt

upper sequence: LOC_Os02g24430.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA16G24670.1 (Glycine max), 5'ss of exon 3
GGAGTTTGAGAAGAACTTTGCTGTTAAGTTCCCAGCTTGCTCAATTGCTGCCAAGTGCCACATTGATCAAAGCACAACAATTCTTGATGTGCAAGGGGTGgtatgtatgtgcaaatatttggataat--tcattaaatgattgcacttttactatttataatctaagaaaaaaaatacatttttag------------------------------------------------------------------------------------------------------
|||||| |||| ||  |||| ||| || ||| | |||||| | |||||||| |||   ||||| |||||||||||||| || |||||||||||||| |||||| |||   | ||   |||   || |   ||||  |  |||| | ||  |  |     |    ||    ||      || ||||                                                                                                       
GGAGTTCGAGAGGACATTTGATGTGAAATTCGCGGCTTGCACCATTGCTGCAAAGAAACACATCGATCAAAGCACAACCATCCTTGATGTGCAAGGAGTGgtacgtaacagaaatagtttatctattagccattccaatattgaagttaaaaaaccagcatgacaaattgaacttactatctttattcagttcacacttcaaaatgaaccttgatatctatgagaatgaaaaagaaatgtgtaaaatatgaaaaatatgatgaaaacttgctatgttttatctcacag

upper sequence: LOC_Os02g24430.2 (Oryza sativa), 5'ss of exon 5
lower sequence: AT2G18180.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAGTTTGAGAAGAACTTTGCTGTTAAGTTCCCAGCTTGCTCAATTGCTGCCAAGTGCCACATTGATCAAAGCACAACAATTCTTGATGTGCAAGGGGTGgtatgtatgtgcaaatatttggataattcattaaatgattgcacttttactatttataatctaagaaaaaaaatacatttttag--
||||||||||| ||  ||   ||||||||||||||| ||||| || || || |||   |||||||||||||| ||||||||||||||||| ||||| |||||| |||       |||  || ||  | ||||    ||    |   |  | | | || | | || |      ||| ||  | |   
GGAGTTTGAGAGGACTTTCAATGTTAAGTTCCCAGCATGCTCCATCGCGGCAAAGAAGCACATTGATCAAAGTACAACAATTCTTGATGTCCAAGGAGTGgtacgtac------ataactgaatggt-catttgtagaaactataatagccaataatgaccaaaaatggtgtatatatgataaaag

upper sequence: LOC_Os02g24430.2 (Oryza sativa), 5'ss of exon 5
lower sequence: AT4G34580.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAGTTTGAGAAGAACTTTGCTGTTAAGTTCCCAGCTTGCTCAATTGCTGCCAAGTGCCACATTGATCAAAGCACAACAATTCTTGATGTGCAAGGGGTGgtatgtatgtgcaaatatttggataattcattaaatgattgcacttttactatttataa-tctaagaaaaaaaatacatttttag-------
 ||||| |||||||  ||    || ||||||||  |||| ||  | || || ||    ||||||||||| ||||||||||||||||| |||||||| |||||| |||| |   ||||  |  ||   |   | |    || || ||  |   |   ||| |  || |       |   || | ||       
AGAGTTCGAGAAGACTTTCAAGGTCAAGTTCCCTTCTTGTTCTGTAGCAGCAAATAAACACATTGATCAGAGCACAACAATTCTTGACGTGCAAGGCGTGgtacgtattt---aataaattcatttctttatgatctctttcagttcaaaagtgggtaaattcaaaactgtgcgtgttttctgagtgattag

upper sequence: LOC_Os02g24430.2 (Oryza sativa), 5'ss of exon 5
lower sequence: AT4G36490.1 (Arabidopsis thaliana), 5'ss of exon 3
GGAGTTTGAGAAGAACTTTGCTGTTAAGTTCCCAGCTTGCTCAATTGCTGCCAAGTGCCACATTGATCAAAGCACAACAATTCTTGATGTGCAAGGGGTGgtatgtatgtgcaaatatttg-gataattcattaaatgattgcacttttactatttataatctaagaaaaaaaatacatttttag---------
||||||||||| || |||   ||||||||||||||| ||||| || || || |||   ||||||||||| |||||||| ||||||||||| ||||| ||||||||||     |||  | || || ||  | || ||||      ||||| |  | | | |   || |            |||| |         
GGAGTTTGAGAGGACCTTCAATGTTAAGTTCCCAGCGTGCTCTATCGCCGCGAAGAAGCACATTGATCAGAGCACAACTATTCTTGATGTCCAAGGAGTGgtatgtaaa---aaacctatgtgagaagaccttcaatg------cttttccagtatgtgactaaacatgcctttccttgtttttgttataacag

upper sequence: LOC_Os02g24430.2 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv03s0038g04480.t01 (Vitis vinifera), 5'ss of exon 4
GGAGTTTGAGAAGAACTTTGCTGTTAAGTTCCCAGCTTGCTCAATTGCTGCCAAGTGCCACATTGATCAAAGCACAACAATTCTTGATGTGCAAGGGGTGgtatgt----atgtg--caaatatttggataattcattaaatgattgcacttttactatttataatctaagaaa----aaaaatacatttttag--------------------------------------------------------------
||| ||||||| || |||    || |||||||||||||||||||| || || ||  | ||||||||||||||||| || ||||| ||||||||||| |||||| ||    || ||    || |     |  | | |   |   ||  ||||   |  |  | |   ||   ||     | || |  || |||                                                                
GGAATTTGAGAGGACCTTCAAAGTCAAGTTCCCAGCTTGCTCAATAGCAGCGAAAAGACACATTGATCAAAGCACCACTATTCTGGATGTGCAAGGAGTGgtacgttcgaatttggctcaagagaaaaactacttacatatcaatatcactgagaaaagatttttcctggaaagtcttagaagtggatgttttatttttgttgagctttgcttgtgaaaagatttcagtaagttaatattcaaaaatttgcctcag