Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatcattccattttgatcttcatattacatctatcataacataataatatatcaatctgcatttgtaccactagagcataactagaggattgccg...

Basic information

species Oryza sativa
transcript LOC_Os02g21970.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g21970.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G090904_T01 (Zea mays), 5'ss of exon 5
GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatcattccattttgatcttcatattacatctatcataacataataat--atatcaatctgcatttgtaccac-tagagcataactagaggattgccg-
|| || ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| || || |||| | |  ||    ||| ||  || |||  |  | | |  | ||  |||| |     ||| |  | | |  | |    |     |||  
GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcttttcattctaacgtt----ttaaattaataatacaaatacacttgaaattcatctactggaatacaatgttgcgtctgatgccacttccgccca

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G038126_T01 (Zea mays), 5'ss of exon 5
GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatcattccattttgatcttcatattacatctatcata-acata-ataatatatcaatctgcatttgtaccactagagcataac-tagaggattgccg--
||||| ||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||| || || |||| ||   ||    ||| ||| || ||| | ||| |   || ||  || | |    |||| |||   ||||  | |         |    
GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcgtttcattgtggcgtt----ttaaatcaataatacaaatacactttaaattcatttactggagtac-actgttgcattgcatcccatgccactttc

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA18G05730.1 (Glycine max), 5'ss of exon 5
-GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatcattccattttgatct-tcatattacatctatcataacataataatatatcaatctgcatttgtaccactagagcataactagaggattgccg------
 || || || || ||||||||||||||||||||||| ||  | || |||||||||||  | || || ||||| ||||||||||| ||  ||    ||  || ||  ||| | |||||    |||| ||   ||      ||    || ||  |    | || | |    |||||| |||| |          
GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTATGTTTCTCGTCCTGACAAAATCAGTGCTGCTGAGgtttgt----ttatatcttattctatgatattgtgcctataatt-tatgtagggatgcttatttgtttcatgatcatttg--tctaactataggaattttttgaagt

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA11G31450.1 (Glycine max), 5'ss of exon 5
GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatcattccattttgatcttca--tattacatctatcataacata-ataatatatcaatctgcatttgtaccactagagcataactagaggattgccg
|| || || || || |||||||||||||||||||| ||  |||| |||||||||||  | || || ||||| ||||||||||| ||  || |  ||  || |||  ||     | ||    | || |    ||| |  | |||  |||     ||  ||    |  ||   |  || |  | |    
GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCTGGAGGATTATGTTTCTCGTCCCGACAAAATCAGTGCTGCTGAGgtttgt-tatttatatcttgtcctatgatttttgtgccaataagtttatataggaaataggaatgcttgttattagt-ttcaagatcatttatataactatt-

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA11G31470.1 (Glycine max), 5'ss of exon 5
GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatcattccattttgatc-ttcatattacatctatcataacataataatatat-caatctgcatttgtaccactagagca-taactagaggattgccg
|| || || || || |||||||||||||||||||| ||| |||| |||||||||||  | || || ||||| ||||||||||| ||  || || |||   |   ||   |  | |  |   ||   | |  ||  |||   |   ||  |  |  | | || |     |   | | || | ||    
GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAGgtttgtttctttcttgtcctatgacttttgtgcccaataattttatgtaggaatgcttgttattagtttcaggatcatttatctaactattggaagtttt---

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT5G58290.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatcattccattttgatcttcatattacatctatcataacataataatatatcaatctgcattt--gtaccactagagcataactagaggattgccg-
|| || ||  | ||||||||| | || ||||||||||| |||||||| ||||||||  | || ||||||||||| |||||||| || ||| | |||    ||  | | |  ||||    |    |||   || |  ||     || |    |   ||    || |  ||  ||   | |||   |  
GTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAGgttagt-ttattttgctt--accattctattcttcccgctatagtttacttttaccatgatatatcctccagtgtttctgggtcaccacctaatgatgttctt

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 5
GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatcattccat-tttgatcttcatattacatctatcataacataataatatatcaatctgcatttgtaccactagagcataactagaggattgccg-
|| || |||||||| |||||||| || ||||||||||| ||||| || ||||||||  | ||||||||||||||||||||||| || ||  | ||||  | | | ||||| | | |     | |  |   |       || ||||  || | |  ||  |||   |   |    | | | |   | 
GTTTGCACTGCTAAGATGAACTTAAGCGATGAGGTTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagc-ttattctgtatcttatctttacagttttcttgttgtctgagtcctcaatttcaaa-tgtagtactagaacttatgttcactgggggaaattttgt

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 5'ss of exon 5
lower sequence: PP1S147_100V6.1 (Physcomitrella patens), 5'ss of exon 5
GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatcattccattttgatcttcatattacatctatcataacataataatatatcaatctgcatttgtaccactagagcataactagaggattgccg-
|| |||||||| || |||||  | || || ||||||||||| ||||| |||||||| || || |||||||| ||||||||||| ||| ||    |  ||   | ||      |     |   | ||    ||| | |  || | |          ||   |     ||  | ||| | |||    
GTATGTACTGCAAAGATGAATCTAAGCGAGGAGGTTGATTTAGAAGACTATGTTTCTAGGCCTGATAAAATAAGTGCTGCTGAGgtgcgttctttcacagcgtcattcctgcacattttaagtgatcttttaaaatttgataagtactggcgaacactgtttccagattgc-agatgcttgtgat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88290018|gb|CI547655.1|CI547655
EST:     AATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: AATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|10794846|gb|AU108812.1|AU108812
EST:     GTGCTGCTGAT                         ATTGCCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGC-AAAATCG
genomic: GTGCTGCTGATgtgagtatca ... tgtttttcagATTG-CTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCG
EST: gi|86599154|gb|CI355771.1|CI355771
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTTCTGAT                         ATTGGTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATC-G
EST: gi|88988222|gb|CI036192.1|CI036192
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCCAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88247517|gb|CI247366.1|CI247366
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88993480|gb|CI110301.1|CI110301
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88524621|gb|CI453459.1|CI453459
EST:     ATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGTTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: ATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|89194535|gb|CI116972.1|CI116972
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88221562|gb|CI221518.1|CI221518
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88444331|gb|CI555048.1|CI555048
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|29659074|gb|CB655349.1|CB655349
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|11564715|gb|AU165351.1|AU165351
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|87035104|gb|CI189727.1|CI189727
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|86501980|gb|CI144613.1|CI144613
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88221302|gb|CI221258.1|CI221258
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88512683|gb|CI440189.1|CI440189
EST:     AGATTATGTTTCCAGACCAGATGAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTAGGCATGCTGTGCGCGAAAATCGG
genomic: AGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|86853412|gb|CI327890.1|CI327890
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTCCTATCTGTCAAGAAGCTGGTATGCATGGCTGCGCGCAAAAATCG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCAT-GCTGTGCGCAAAAATCG
EST: gi|29624229|gb|CB629240.1|CB629240
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|87033424|gb|CI188048.1|CI188048
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88996844|gb|CI389510.1|CI389510
EST:     TCCACACCAGATAAAATTAGTGCGGCTGAT                         A-TGCTCCTATCTGTCAAGAAGCTGGTATGCATTCTGTGCGCAAAAATCGG
genomic: TCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88993805|gb|CI112709.1|CI112709
EST:     TATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|86503025|gb|CI145658.1|CI145658
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|29656424|gb|CB652699.1|CB652699
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88449415|gb|CI533974.1|CI533974
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|86505292|gb|CI147925.1|CI147925
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88843994|gb|CI008575.1|CI008575
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88516342|gb|CI443996.1|CI443996
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|29683628|gb|CB679903.1|CB679903
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|25798027|gb|CA753988.1|CA753988
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAANATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|89184394|gb|CI046959.1|CI046959
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCCAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|89190189|gb|CI392239.1|CI392239
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCT-TCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|86538182|gb|CI178388.1|CI178388
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|89195713|gb|CI393742.1|CI393742
EST:     GTGCTGCTGAT                         ATTGCTGCTATCTTTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: GTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88218762|gb|CI218611.1|CI218611
EST:     AGTGCTGCTGAT                         AGTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: AGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|29636555|gb|CB641564.1|CB641564
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|86859555|gb|CI278928.1|CI278928
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCCCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88256843|gb|CI354624.1|CI354624
EST:     ATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: ATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|89177204|gb|CI043707.1|CI043707
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|29624228|gb|CB629239.1|CB629239
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTAT
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTAT
EST: gi|88221274|gb|CI221230.1|CI221230
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|86836316|gb|CI348258.1|CI348258
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTTTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|86601860|gb|CI258536.1|CI258536
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|89183380|gb|CI045945.1|CI045945
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|86832828|gb|CI332434.1|CI332434
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|86413612|gb|CI019197.1|CI019197
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|86495973|gb|CI138606.1|CI138606
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCACAAAATCG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCA-AAAATCG
EST: gi|29628786|gb|CB633797.1|CB633797
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|86503152|gb|CI145785.1|CI145785
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|86427789|gb|CI072886.1|CI072886
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88227444|gb|CI226924.1|CI226924
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|29624299|gb|CB629310.1|CB629310
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|89168795|gb|CI020876.1|CI020876
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|88248544|gb|CI248393.1|CI248393
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
EST: gi|86432093|gb|CI085704.1|CI085704
EST:     TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG
genomic: TTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 75 (downstream exon)
Score: 65

GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatca ... tgtttttcagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGGTATGTTATCCTCCCCAAGGACTTCGAGAAGGGTTACCGAACCAATGTCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatcattccattttgatcttcatattacatctatcataacataataatatatcaatctgcatttgtaccactagagcataactagaggattgccg

- - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT